Difference between revisions of "TSS:Hg 106006.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=63 |entrez_id=6623 |gc_percent=0.676617 |gene_alias=BCSG1|SR |gene_description=synuclein gamma |gene_name=SNCG |gene_type=protei...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SR= | ||
| + | |all_trans=ENST00000465679.5:0 ENST00000348795.8:0 uc057uqt.1:0 uc057uqu.1:0 AK223367:0 AK311652:0 BC014098:0 AK312141:17 ENST00000372017.3:25 uc001keb.3:25 AF017256:25 NM_003087:-27 AF411524:56 EU019993:57 DQ895719:62 EU176715:62 DQ892334:62 DQ892505:62 AF010126:62 AB464279:65 KJ892170:66 CR541790:67 CR541788:67 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=0 | ||
|distance_to_tss=63 | |distance_to_tss=63 | ||
| + | |end=86958631 | ||
|entrez_id=6623 | |entrez_id=6623 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
|gene_alias=BCSG1|SR | |gene_alias=BCSG1|SR | ||
|gene_description=synuclein gamma | |gene_description=synuclein gamma | ||
| − | |gene_name=SNCG | + | |gene_id=6623 |
| + | |gene_name=synuclein gamma | ||
| + | |gene_source=HGNC:11141 | ||
| + | |gene_symbol=SNCG | ||
| + | |gene_synonyms=BCSG1 SR persyn | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11141 | ||
|nearest_ensembl=ENSG00000173267 | |nearest_ensembl=ENSG00000173267 | ||
|nearest_promoter_id=NM_003087 | |nearest_promoter_id=NM_003087 | ||
|nearest_refseq=NM_003087 | |nearest_refseq=NM_003087 | ||
|nearest_unigene=Hs.349470 | |nearest_unigene=Hs.349470 | ||
| + | |num_trans=23 | ||
| + | |species=human | ||
| + | |start=86958557 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000465679.5 ENST00000348795.8 uc057uqt.1 uc057uqu.1 AK223367 AK311652 BC014098 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106006.1 | |tss_id=hg_106006.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F8W754 | ||
}} | }} | ||
Revision as of 22:00, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000465679.5 ENST00000348795.8 uc057uqt.1 uc057uqu.1 AK223367 AK311652 BC014098 |
|---|---|
| Distance: | 0 |
| Num_trans: | 23 |
| All_trans: | ENST00000465679.5:0 ENST00000348795.8:0 uc057uqt.1:0 uc057uqu.1:0 AK223367:0 AK311652:0 BC014098:0 AK312141:17 ENST00000372017.3:25 uc001keb.3:25 AF017256:25 NM_003087:-27 AF411524:56 EU019993:57 DQ895719:62 EU176715:62 DQ892334:62 DQ892505:62 AF010126:62 AB464279:65 KJ892170:66 CR541790:67 CR541788:67 |
TATA-Box annotation
| Distance to TSS: | 63 |
|---|---|
| Nearest PromoterID: | NM_003087 |
| Entrez ID: | 6623 |
| Nearest Unigene: | Hs.349470 |
| Nearest Refseq: | NM_003087 |
| Nearest Ensembl: | ENSG00000173267 |
| Gene Name: | synuclein gamma |
| Gene Alias: | BCSG1 |
| Gene Description: | synuclein gamma |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
