Difference between revisions of "TSS:Hg 106015.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.025 |distance_to_tss=4 |entrez_id=643161 |gc_percent=0.631841 |gene_alias=bA96C23.5 |gene_description=family with sequence similarity 25 member A |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001146157:-4 BC171878:5 BC171915:5 ENST00000343959.4:12 uc010qmo.3:12 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| + | |distance=-4 | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
| + | |end=87020294 | ||
|entrez_id=643161 | |entrez_id=643161 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=bA96C23.5 | |gene_alias=bA96C23.5 | ||
|gene_description=family with sequence similarity 25 member A | |gene_description=family with sequence similarity 25 member A | ||
| − | |gene_name=FAM25A | + | |gene_id=643161 |
| + | |gene_name=family with sequence similarity 25 member A | ||
| + | |gene_source=HGNC:23436 | ||
| + | |gene_symbol=FAM25A | ||
| + | |gene_synonyms=bA96C23.5 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23436 | ||
|nearest_ensembl=ENSG00000188100 | |nearest_ensembl=ENSG00000188100 | ||
|nearest_promoter_id=NM_001146157 | |nearest_promoter_id=NM_001146157 | ||
|nearest_refseq=NM_001146157 | |nearest_refseq=NM_001146157 | ||
|nearest_unigene=Hs.729945 | |nearest_unigene=Hs.729945 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=87020292 | ||
| + | |strand=+ | ||
|tata_box="-31(AGCTATAAAAGC,-,0.00)" | |tata_box="-31(AGCTATAAAAGC,-,0.00)" | ||
| + | |transcript_name=NM_001146157 | ||
| + | |tss_classification=no | ||
|tss_id=hg_106015.1 | |tss_id=hg_106015.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B3EWG6 | ||
}} | }} | ||
Revision as of 22:00, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001146157 |
|---|---|
| Distance: | -4 |
| Num_trans: | 5 |
| All_trans: | NM_001146157:-4 BC171878:5 BC171915:5 ENST00000343959.4:12 uc010qmo.3:12 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001146157 |
| Entrez ID: | 643161 |
| Nearest Unigene: | Hs.729945 |
| Nearest Refseq: | NM_001146157 |
| Nearest Ensembl: | ENSG00000188100 |
| Gene Name: | family with sequence similarity 25 member A |
| Gene Alias: | bA96C23.5 |
| Gene Description: | family with sequence similarity 25 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(AGCTATAAAAGC,-,0.00)" |
