Difference between revisions of "TSS:Hg 106025.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=143 |entrez_id=9060 |gc_percent=0.706468 |gene_alias=ATPSK2|BCYM4|SK2 |gene_description=3'-phosphoadenosine 5'-phosphosulfate s...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BCYM4= | ||
| + | |SK2= | ||
| + | |all_trans=BC009894:0 AK312556:0 AF091242:15 AF150754:15 AF074331:33 AF173365:48 DQ893625:91 DQ895430:91 KR710243:94 KR710244:94 KJ905366:94 AF313907:96 ENST00000456849.1:-120 NM_004670:-120 NM_001015880:-120 uc001kew.4:-120 ENST00000361175.8:-226 uc001kex.4:-226 ENST00000465996.5:471 uc057usd.1:471 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=143 | |distance_to_tss=143 | ||
| + | |end=87659886 | ||
|entrez_id=9060 | |entrez_id=9060 | ||
|gc_percent=0.706468 | |gc_percent=0.706468 | ||
|gene_alias=ATPSK2|BCYM4|SK2 | |gene_alias=ATPSK2|BCYM4|SK2 | ||
|gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | |gene_description=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | ||
| − | |gene_name=PAPSS2 | + | |gene_id=9060 |
| + | |gene_name=3'-phosphoadenosine 5'-phosphosulfate synthase 2 | ||
| + | |gene_source=HGNC:8604 | ||
| + | |gene_symbol=PAPSS2 | ||
| + | |gene_synonyms=ATPSK2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8604 | ||
|nearest_ensembl=ENSG00000198682 | |nearest_ensembl=ENSG00000198682 | ||
|nearest_promoter_id=NM_001015880 | |nearest_promoter_id=NM_001015880 | ||
|nearest_refseq=NM_004670 | |nearest_refseq=NM_004670 | ||
|nearest_unigene=Hs.524491 | |nearest_unigene=Hs.524491 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=87659838 | ||
| + | |strand=+ | ||
|tata_box="-14(CTTTTTATACCT,+,0.00)" | |tata_box="-14(CTTTTTATACCT,+,0.00)" | ||
| + | |transcript_name=BC009894 AK312556 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106025.1 | |tss_id=hg_106025.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:00, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC009894 AK312556 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | BC009894:0 AK312556:0 AF091242:15 AF150754:15 AF074331:33 AF173365:48 DQ893625:91 DQ895430:91 KR710243:94 KR710244:94 KJ905366:94 AF313907:96 ENST00000456849.1:-120 NM_004670:-120 NM_001015880:-120 uc001kew.4:-120 ENST00000361175.8:-226 uc001kex.4:-226 ENST00000465996.5:471 uc057usd.1:471 |
TATA-Box annotation
| Distance to TSS: | 143 |
|---|---|
| Nearest PromoterID: | NM_001015880 |
| Entrez ID: | 9060 |
| Nearest Unigene: | Hs.524491 |
| Nearest Refseq: | NM_004670 |
| Nearest Ensembl: | ENSG00000198682 |
| Gene Name: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Alias: | ATPSK2 |
| Gene Description: | 3'-phosphoadenosine 5'-phosphosulfate synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.706468 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-14(CTTTTTATACCT,+,0.00)" |
