Difference between revisions of "TSS:Hg 106210.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=-3 |entrez_id=84333 |gc_percent=0.820896 |gene_alias=RNF159 |gene_description=polycomb group ring finger 5 |gene_name=PCGF5 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NR_046310:0 NM_032373:0 ENST00000490164.1:180 uc031pwu.2:180 ENST00000336126.5:185 uc001khi.5:185 AL832496:185 ENST00000496708.1:-418 uc057uvn.1:-418 ENST00000543648.5:-444 NM_001256549:-444 uc010qnk.4:-444 AK303014:-444 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
| + | |end=91220603 | ||
|entrez_id=84333 | |entrez_id=84333 | ||
|gc_percent=0.820896 | |gc_percent=0.820896 | ||
|gene_alias=RNF159 | |gene_alias=RNF159 | ||
|gene_description=polycomb group ring finger 5 | |gene_description=polycomb group ring finger 5 | ||
| − | |gene_name=PCGF5 | + | |gene_id=84333 |
| + | |gene_name=polycomb group ring finger 5 | ||
| + | |gene_source=HGNC:28264 | ||
| + | |gene_symbol=PCGF5 | ||
| + | |gene_synonyms=MGC16202 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28264 | ||
|nearest_ensembl=ENSG00000180628 | |nearest_ensembl=ENSG00000180628 | ||
|nearest_promoter_id=NM_032373 | |nearest_promoter_id=NM_032373 | ||
|nearest_refseq=NM_032373 | |nearest_refseq=NM_032373 | ||
|nearest_unigene=Hs.500512 | |nearest_unigene=Hs.500512 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=91220594 | ||
| + | |strand=+ | ||
| + | |transcript_name=NR_046310 NM_032373 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106210.1 | |tss_id=hg_106210.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q86SE9 | ||
}} | }} | ||
Revision as of 22:08, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NR_046310 NM_032373 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | NR_046310:0 NM_032373:0 ENST00000490164.1:180 uc031pwu.2:180 ENST00000336126.5:185 uc001khi.5:185 AL832496:185 ENST00000496708.1:-418 uc057uvn.1:-418 ENST00000543648.5:-444 NM_001256549:-444 uc010qnk.4:-444 AK303014:-444 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_032373 |
| Entrez ID: | 84333 |
| Nearest Unigene: | Hs.500512 |
| Nearest Refseq: | NM_032373 |
| Nearest Ensembl: | ENSG00000180628 |
| Gene Name: | polycomb group ring finger 5 |
| Gene Alias: | RNF159 |
| Gene Description: | polycomb group ring finger 5 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.820896 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
