Difference between revisions of "TSS:Hg 106275.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=69 |entrez_id=1592 |gc_percent=0.711443 |gene_alias=CP26|CYP26|P450RAI|P450RAI1 |gene_description=cytochrome P450 family 26 subf...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CYP26= | ||
| + | |P450RAI= | ||
| + | |P450RAI1= | ||
| + | |all_trans=BC156283:-21 BC157063:-21 AF005418:-44 ENST00000224356.4:-64 NM_000783:-64 uc001kil.3:-64 AK075374:-64 ENST00000622925.1:114 uc057uwr.1:114 ENST00000624589.3:348 uc057uws.1:348 ENST00000371531.5:-479 NM_057157:-479 uc001kik.1:-479 AK027560:-479 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-21 | ||
|distance_to_tss=69 | |distance_to_tss=69 | ||
| + | |end=93073964 | ||
|entrez_id=1592 | |entrez_id=1592 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=CP26|CYP26|P450RAI|P450RAI1 | |gene_alias=CP26|CYP26|P450RAI|P450RAI1 | ||
|gene_description=cytochrome P450 family 26 subfamily A member 1 | |gene_description=cytochrome P450 family 26 subfamily A member 1 | ||
| − | |gene_name=CYP26A1 | + | |gene_id=1592 |
| + | |gene_name=cytochrome P450 family 26 subfamily A member 1 | ||
| + | |gene_source=HGNC:2603 | ||
| + | |gene_symbol=CYP26A1 | ||
| + | |gene_synonyms=CP26 CYP26 P450RAI P450RAI1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2603 | ||
|nearest_ensembl=ENSG00000095596 | |nearest_ensembl=ENSG00000095596 | ||
|nearest_promoter_id=NM_000783 | |nearest_promoter_id=NM_000783 | ||
|nearest_refseq=NM_000783 | |nearest_refseq=NM_000783 | ||
|nearest_unigene=Hs.150595 | |nearest_unigene=Hs.150595 | ||
| + | |num_trans=15 | ||
| + | |species=human | ||
| + | |start=93073953 | ||
| + | |strand=+ | ||
|tata_box="-100(GCCTATAAAGCG,+,0.00)" | |tata_box="-100(GCCTATAAAGCG,+,0.00)" | ||
| + | |transcript_name=BC156283 BC157063 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106275.1 | |tss_id=hg_106275.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:11, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC156283 BC157063 |
|---|---|
| Distance: | -21 |
| Num_trans: | 15 |
| All_trans: | BC156283:-21 BC157063:-21 AF005418:-44 ENST00000224356.4:-64 NM_000783:-64 uc001kil.3:-64 AK075374:-64 ENST00000622925.1:114 uc057uwr.1:114 ENST00000624589.3:348 uc057uws.1:348 ENST00000371531.5:-479 NM_057157:-479 uc001kik.1:-479 AK027560:-479 |
TATA-Box annotation
| Distance to TSS: | 69 |
|---|---|
| Nearest PromoterID: | NM_000783 |
| Entrez ID: | 1592 |
| Nearest Unigene: | Hs.150595 |
| Nearest Refseq: | NM_000783 |
| Nearest Ensembl: | ENSG00000095596 |
| Gene Name: | cytochrome P450 family 26 subfamily A member 1 |
| Gene Alias: | CP26 |
| Gene Description: | cytochrome P450 family 26 subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-100(GCCTATAAAGCG,+,0.00)" |
