Difference between revisions of "TSS:Hg 106346.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-19 |entrez_id=1557 |gc_percent=0.442786 |gene_alias=CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 |gene_description=cytochrom...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CYP2C= | ||
| + | |CYPIIC17= | ||
| + | |CYPIIC19= | ||
| + | |P450C2C= | ||
| + | |P450IIC19= | ||
| + | |all_trans=ENST00000480405.2:14 NM_000769:14 uc057uzp.1:14 ENST00000371321.7:-33 uc010qnz.3:-33 M61854:34 AB463557:39 BC111846:39 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=14 | ||
|distance_to_tss=-19 | |distance_to_tss=-19 | ||
| + | |end=94762667 | ||
|entrez_id=1557 | |entrez_id=1557 | ||
|gc_percent=0.442786 | |gc_percent=0.442786 | ||
|gene_alias=CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 | |gene_alias=CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 | ||
|gene_description=cytochrome P450 family 2 subfamily C member 19 | |gene_description=cytochrome P450 family 2 subfamily C member 19 | ||
| − | |gene_name=CYP2C19 | + | |gene_id=1557 |
| + | |gene_name=cytochrome P450 family 2 subfamily C member 19 | ||
| + | |gene_source=HGNC:2621 | ||
| + | |gene_symbol=CYP2C19 | ||
| + | |gene_synonyms=CPCJ P450IIC19 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2621 | ||
|nearest_ensembl=ENSG00000165841 | |nearest_ensembl=ENSG00000165841 | ||
|nearest_promoter_id=NM_000769 | |nearest_promoter_id=NM_000769 | ||
|nearest_refseq=NM_000769 | |nearest_refseq=NM_000769 | ||
|nearest_unigene=Hs.282409 | |nearest_unigene=Hs.282409 | ||
| + | |num_trans=8 | ||
| + | |species=human | ||
| + | |start=94762656 | ||
| + | |strand=+ | ||
|tata_box="-15(TGTTATAAAAAG,-,0.00)" | |tata_box="-15(TGTTATAAAAAG,-,0.00)" | ||
| + | |transcript_name=ENST00000480405.2 NM_000769 uc057uzp.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106346.1 | |tss_id=hg_106346.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X125 P33261 | ||
}} | }} | ||
Revision as of 22:14, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000480405.2 NM_000769 uc057uzp.1 |
|---|---|
| Distance: | 14 |
| Num_trans: | 8 |
| All_trans: | ENST00000480405.2:14 NM_000769:14 uc057uzp.1:14 ENST00000371321.7:-33 uc010qnz.3:-33 M61854:34 AB463557:39 BC111846:39 |
TATA-Box annotation
| Distance to TSS: | -19 |
|---|---|
| Nearest PromoterID: | NM_000769 |
| Entrez ID: | 1557 |
| Nearest Unigene: | Hs.282409 |
| Nearest Refseq: | NM_000769 |
| Nearest Ensembl: | ENSG00000165841 |
| Gene Name: | cytochrome P450 family 2 subfamily C member 19 |
| Gene Alias: | CPCJ |
| Gene Description: | cytochrome P450 family 2 subfamily C member 19 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.442786 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-15(TGTTATAAAAAG,-,0.00)" |
