Difference between revisions of "TSS:Hg 106426.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=22 |entrez_id=100505540 |gc_percent=0.527363 |gene_alias=- |gene_description=SLIT1 antisense RNA 1 |gene_name=SLIT1-AS1 |gene_ty...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000424428.1:-18 NR_038330:-18 uc001kmx.2:-18 BC021189:-18 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=-18 | ||
|distance_to_tss=22 | |distance_to_tss=22 | ||
| + | |end=97102783 | ||
|entrez_id=100505540 | |entrez_id=100505540 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=SLIT1 antisense RNA 1 | |gene_description=SLIT1 antisense RNA 1 | ||
| − | |gene_name=SLIT1-AS1 | + | |gene_id=100505540 |
| + | |gene_name=SLIT1 antisense RNA 1 | ||
| + | |gene_source=HGNC:51198 | ||
| + | |gene_symbol=SLIT1-AS1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:51198 | ||
|nearest_ensembl=ENSG00000234855 | |nearest_ensembl=ENSG00000234855 | ||
|nearest_promoter_id=NR_038330 | |nearest_promoter_id=NR_038330 | ||
|nearest_refseq=NR_038330 | |nearest_refseq=NR_038330 | ||
|nearest_unigene=Hs.568878 | |nearest_unigene=Hs.568878 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=97102773 | ||
| + | |strand=+ | ||
|tata_box="-32(GCTTATATACAG,+,0.00)" | |tata_box="-32(GCTTATATACAG,+,0.00)" | ||
| + | |transcript_name=ENST00000424428.1 NR_038330 uc001kmx.2 BC021189 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106426.1 | |tss_id=hg_106426.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:18, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000424428.1 NR_038330 uc001kmx.2 BC021189 |
|---|---|
| Distance: | -18 |
| Num_trans: | 4 |
| All_trans: | ENST00000424428.1:-18 NR_038330:-18 uc001kmx.2:-18 BC021189:-18 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NR_038330 |
| Entrez ID: | 100505540 |
| Nearest Unigene: | Hs.568878 |
| Nearest Refseq: | NR_038330 |
| Nearest Ensembl: | ENSG00000234855 |
| Gene Name: | SLIT1 antisense RNA 1 |
| Gene Alias: | - |
| Gene Description: | SLIT1 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(GCTTATATACAG,+,0.00)" |
