Difference between revisions of "TSS:Hg 106464.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=35 |entrez_id=118813 |gc_percent=0.681592 |gene_alias=PROTRUDIN|SPG33 |gene_description=zinc finger FYVE-type containing 27 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |SPG33= | ||
| + | |all_trans=ENST00000337540.11:0 ENST00000370613.7:0 ENST00000370610.7:0 ENST00000357540.8:0 ENST00000393677.8:0 ENST00000423811.3:0 ENST00000359980.5:0 ENST00000462887.1:0 NM_144588:0 NM_001174119:0 NM_001174122:0 NM_001174120:0 NM_001002262:0 NM_001174121:0 uc010qpd.3:0 uc001koq.4:0 uc010qpb.3:0 uc010qpa.3:0 uc001kol.3:0 uc057vgi.1:0 uc001kom.3:0 uc057vgj.1:0 AK296295:0 AK057481:0 AK300438:0 AK299735:0 AK097945:0 BC030621:0 AK074876:0 AK296588:0 BX647836:0 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=35 | |distance_to_tss=35 | ||
| + | |end=97737197 | ||
|entrez_id=118813 | |entrez_id=118813 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=PROTRUDIN|SPG33 | |gene_alias=PROTRUDIN|SPG33 | ||
|gene_description=zinc finger FYVE-type containing 27 | |gene_description=zinc finger FYVE-type containing 27 | ||
| − | |gene_name=ZFYVE27 | + | |gene_id=118813 |
| + | |gene_name=zinc finger FYVE-type containing 27 | ||
| + | |gene_source=HGNC:26559 | ||
| + | |gene_symbol=ZFYVE27 | ||
| + | |gene_synonyms=FLJ32919 SPG33 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26559 | ||
|nearest_ensembl=ENSG00000155256 | |nearest_ensembl=ENSG00000155256 | ||
|nearest_promoter_id=NM_001174120 | |nearest_promoter_id=NM_001174120 | ||
|nearest_refseq=NM_144588 | |nearest_refseq=NM_144588 | ||
|nearest_unigene=Hs.744075 | |nearest_unigene=Hs.744075 | ||
| + | |num_trans=31 | ||
| + | |species=human | ||
| + | |start=97737115 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000337540.11 ENST00000370613.7 ENST00000370610.7 ENST00000357540.8 ENST00000393677.8 ENST00000423811.3 ENST00000359980.5 ENST00000462887.1 NM_144588 NM_001174119 NM_001174122 NM_001174120 NM_001002262 NM_001174121 uc010qpd.3 uc001koq.4 uc010qpb.3 uc010qpa.3 uc001kol.3 uc057vgi.1 uc001kom.3 uc057vgj.1 AK296295 AK057481 AK300438 AK299735 AK097945 BC030621 AK074876 AK296588 BX647836 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106464.1 | |tss_id=hg_106464.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z6J9 Q5T4F4 X6RII9 | ||
}} | }} | ||
Revision as of 22:19, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000337540.11 ENST00000370613.7 ENST00000370610.7 ENST00000357540.8 ENST00000393677.8 ENST00000423811.3 ENST00000359980.5 ENST00000462887.1 NM_144588 NM_001174119 NM_001174122 NM_001174120 NM_001002262 NM_001174121 uc010qpd.3 uc001koq.4 uc010qpb.3 uc010qpa.3 uc001kol.3 uc057vgi.1 uc001kom.3 uc057vgj.1 AK296295 AK057481 AK300438 AK299735 AK097945 BC030621 AK074876 AK296588 BX647836 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000337540.11:0 ENST00000370613.7:0 ENST00000370610.7:0 ENST00000357540.8:0 ENST00000393677.8:0 ENST00000423811.3:0 ENST00000359980.5:0 ENST00000462887.1:0 NM_144588:0 NM_001174119:0 NM_001174122:0 NM_001174120:0 NM_001002262:0 NM_001174121:0 uc010qpd.3:0 uc001koq.4:0 uc010qpb.3:0 uc010qpa.3:0 uc001kol.3:0 uc057vgi.1:0 uc001kom.3:0 uc057vgj.1:0 AK296295:0 AK057481:0 AK300438:0 AK299735:0 AK097945:0 BC030621:0 AK074876:0 AK296588:0 BX647836:0 |
TATA-Box annotation
| Distance to TSS: | 35 |
|---|---|
| Nearest PromoterID: | NM_001174120 |
| Entrez ID: | 118813 |
| Nearest Unigene: | Hs.744075 |
| Nearest Refseq: | NM_144588 |
| Nearest Ensembl: | ENSG00000155256 |
| Gene Name: | zinc finger FYVE-type containing 27 |
| Gene Alias: | PROTRUDIN |
| Gene Description: | zinc finger FYVE-type containing 27 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
