Difference between revisions of "TSS:Hg 106613.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=204 |entrez_id=5076 |gc_percent=0.771144 |gene_alias=FSGS7|PAPRS |gene_description=paired box 2 |gene_name=PAX2 |gene_type=prot...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAPRS= | ||
| + | |all_trans=ENST00000355243.7:-188 ENST00000370296.6:-188 ENST00000428433.5:-188 NM_003989:-188 NM_003990:-188 NM_000278:-188 NM_003988:-188 NM_003987:-188 uc001kro.4:-188 uc001krl.4:-188 uc001krm.4:-188 L25597:-188 M89470:-188 ENST00000554363.2:247 uc057vkp.1:247 ENST00000361791.7:288 uc010qps.3:288 ENST00000427256.5:296 uc057vkq.1:296 AB463994:327 BC141452:327 BC148710:327 ENST00000483202.2:332 uc057vkr.1:332 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-188 | ||
|distance_to_tss=204 | |distance_to_tss=204 | ||
| + | |end=100745932 | ||
|entrez_id=5076 | |entrez_id=5076 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=FSGS7|PAPRS | |gene_alias=FSGS7|PAPRS | ||
|gene_description=paired box 2 | |gene_description=paired box 2 | ||
| − | |gene_name=PAX2 | + | |gene_id=5076 |
| + | |gene_name=paired box 2 | ||
| + | |gene_source=HGNC:8616 | ||
| + | |gene_symbol=PAX2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:8616 | ||
|nearest_ensembl=ENSG00000075891 | |nearest_ensembl=ENSG00000075891 | ||
|nearest_promoter_id=NM_003989 | |nearest_promoter_id=NM_003989 | ||
|nearest_refseq=NM_000278 | |nearest_refseq=NM_000278 | ||
|nearest_unigene=Hs.155644 | |nearest_unigene=Hs.155644 | ||
| + | |num_trans=24 | ||
| + | |species=human | ||
| + | |start=100745898 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000355243.7 ENST00000370296.6 ENST00000428433.5 NM_003989 NM_003990 NM_000278 NM_003988 NM_003987 uc001kro.4 uc001krl.4 uc001krm.4 L25597 M89470 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106613.1 | |tss_id=hg_106613.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q02962 | ||
}} | }} | ||
Revision as of 22:26, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000355243.7 ENST00000370296.6 ENST00000428433.5 NM_003989 NM_003990 NM_000278 NM_003988 NM_003987 uc001kro.4 uc001krl.4 uc001krm.4 L25597 M89470 |
|---|---|
| Distance: | -188 |
| Num_trans: | 24 |
| All_trans: | ENST00000355243.7:-188 ENST00000370296.6:-188 ENST00000428433.5:-188 NM_003989:-188 NM_003990:-188 NM_000278:-188 NM_003988:-188 NM_003987:-188 uc001kro.4:-188 uc001krl.4:-188 uc001krm.4:-188 L25597:-188 M89470:-188 ENST00000554363.2:247 uc057vkp.1:247 ENST00000361791.7:288 uc010qps.3:288 ENST00000427256.5:296 uc057vkq.1:296 AB463994:327 BC141452:327 BC148710:327 ENST00000483202.2:332 uc057vkr.1:332 |
TATA-Box annotation
| Distance to TSS: | 204 |
|---|---|
| Nearest PromoterID: | NM_003989 |
| Entrez ID: | 5076 |
| Nearest Unigene: | Hs.155644 |
| Nearest Refseq: | NM_000278 |
| Nearest Ensembl: | ENSG00000075891 |
| Gene Name: | paired box 2 |
| Gene Alias: | FSGS7 |
| Gene Description: | paired box 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
