Difference between revisions of "TSS:Hg 106749.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=581 |entrez_id=81603 |gc_percent=0.691542 |gene_alias=GERP|RNF27 |gene_description=tripartite motif containing 8 |gene_name=TRI...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RNF27= | ||
| + | |all_trans=ENST00000462202.2:-132 uc057vqz.1:-132 AF220034:-401 DQ895209:-403 DQ892019:-403 AL360160:-410 AF281046:-410 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=-132 | ||
|distance_to_tss=581 | |distance_to_tss=581 | ||
| + | |end=102645133 | ||
|entrez_id=81603 | |entrez_id=81603 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=GERP|RNF27 | |gene_alias=GERP|RNF27 | ||
|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
| − | |gene_name=TRIM8 | + | |gene_id=81603 |
| + | |gene_name=tripartite motif containing 8 | ||
| + | |gene_source=HGNC:15579 | ||
| + | |gene_symbol=TRIM8 | ||
| + | |gene_synonyms=GERP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15579 | ||
|nearest_ensembl=ENSG00000171206 | |nearest_ensembl=ENSG00000171206 | ||
|nearest_promoter_id=NM_030912 | |nearest_promoter_id=NM_030912 | ||
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=102645018 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000462202.2 uc057vqz.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106749.1 | |tss_id=hg_106749.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=R4GN03 | ||
}} | }} | ||
Revision as of 22:32, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000462202.2 uc057vqz.1 |
|---|---|
| Distance: | -132 |
| Num_trans: | 7 |
| All_trans: | ENST00000462202.2:-132 uc057vqz.1:-132 AF220034:-401 DQ895209:-403 DQ892019:-403 AL360160:-410 AF281046:-410 |
TATA-Box annotation
| Distance to TSS: | 581 |
|---|---|
| Nearest PromoterID: | NM_030912 |
| Entrez ID: | 81603 |
| Nearest Unigene: | Hs.336810 |
| Nearest Refseq: | NM_030912 |
| Nearest Ensembl: | ENSG00000171206 |
| Gene Name: | tripartite motif containing 8 |
| Gene Alias: | GERP |
| Gene Description: | tripartite motif containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
