Difference between revisions of "TSS:Hg 106750.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=4665 |entrez_id=81603 |gc_percent=0.562189 |gene_alias=GERP|RNF27 |gene_description=tripartite motif containing 8 |gene_name=TRI...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |RNF27= | ||
| + | |all_trans=ENST00000487927.5:54 uc057vra.1:54 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=54 | ||
|distance_to_tss=4665 | |distance_to_tss=4665 | ||
| + | |end=102649165 | ||
|entrez_id=81603 | |entrez_id=81603 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
|gene_alias=GERP|RNF27 | |gene_alias=GERP|RNF27 | ||
|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
| − | |gene_name=TRIM8 | + | |gene_id=81603 |
| + | |gene_name=tripartite motif containing 8 | ||
| + | |gene_source=HGNC:15579 | ||
| + | |gene_symbol=TRIM8 | ||
| + | |gene_synonyms=GERP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15579 | ||
|nearest_ensembl=ENSG00000171206 | |nearest_ensembl=ENSG00000171206 | ||
|nearest_promoter_id=NM_030912 | |nearest_promoter_id=NM_030912 | ||
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=102649154 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000487927.5 uc057vra.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106750.1 | |tss_id=hg_106750.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 22:32, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000487927.5 uc057vra.1 |
|---|---|
| Distance: | 54 |
| Num_trans: | 2 |
| All_trans: | ENST00000487927.5:54 uc057vra.1:54 |
TATA-Box annotation
| Distance to TSS: | 4665 |
|---|---|
| Nearest PromoterID: | NM_030912 |
| Entrez ID: | 81603 |
| Nearest Unigene: | Hs.336810 |
| Nearest Refseq: | NM_030912 |
| Nearest Ensembl: | ENSG00000171206 |
| Gene Name: | tripartite motif containing 8 |
| Gene Alias: | GERP |
| Gene Description: | tripartite motif containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
