Difference between revisions of "TSS:Hg 108793.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=31 |entrez_id=55130 |gc_percent=0.527363 |gene_alias=CILD23 |gene_description=armadillo repeat containing 4 |gene_name=ARMC4 |g...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_001312689:-18 AK302627:-18 AK302419:-350 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=-18 | ||
|distance_to_tss=31 | |distance_to_tss=31 | ||
| + | |end=27983088 | ||
|entrez_id=55130 | |entrez_id=55130 | ||
|gc_percent=0.527363 | |gc_percent=0.527363 | ||
|gene_alias=CILD23 | |gene_alias=CILD23 | ||
|gene_description=armadillo repeat containing 4 | |gene_description=armadillo repeat containing 4 | ||
| − | |gene_name=ARMC4 | + | |gene_id=55130 |
| + | |gene_name=armadillo repeat containing 4 | ||
| + | |gene_source=HGNC:25583 | ||
| + | |gene_symbol=ARMC4 | ||
| + | |gene_synonyms=CILD23 DKFZP434P1735 FLJ10376 FLJ10817 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25583 | ||
|nearest_ensembl=ENSG00000169126 | |nearest_ensembl=ENSG00000169126 | ||
|nearest_promoter_id=NM_001312689 | |nearest_promoter_id=NM_001312689 | ||
|nearest_refseq=NM_018076 | |nearest_refseq=NM_018076 | ||
|nearest_unigene=Hs.127530 | |nearest_unigene=Hs.127530 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=27983062 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_001312689 AK302627 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_108793.1 | |tss_id=hg_108793.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z7Y0 Q5T2S8 | ||
}} | }} | ||
Revision as of 23:59, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001312689 AK302627 |
|---|---|
| Distance: | -18 |
| Num_trans: | 3 |
| All_trans: | NM_001312689:-18 AK302627:-18 AK302419:-350 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_001312689 |
| Entrez ID: | 55130 |
| Nearest Unigene: | Hs.127530 |
| Nearest Refseq: | NM_018076 |
| Nearest Ensembl: | ENSG00000169126 |
| Gene Name: | armadillo repeat containing 4 |
| Gene Alias: | CILD23 |
| Gene Description: | armadillo repeat containing 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.527363 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
