Difference between revisions of "TSS:Hg 108799.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=-10 |entrez_id=55130 |gc_percent=0.676617 |gene_alias=CILD23 |gene_description=armadillo repeat containing 4 |gene_name=ARMC4 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000305242.9:0 NM_018076:0 uc001itz.3:0 BC085611:0 AK001679:0 NM_001290020:134 AK292521:178 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=0 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
| + | |end=27999081 | ||
|entrez_id=55130 | |entrez_id=55130 | ||
|gc_percent=0.676617 | |gc_percent=0.676617 | ||
|gene_alias=CILD23 | |gene_alias=CILD23 | ||
|gene_description=armadillo repeat containing 4 | |gene_description=armadillo repeat containing 4 | ||
| − | |gene_name=ARMC4 | + | |gene_id=55130 |
| + | |gene_name=armadillo repeat containing 4 | ||
| + | |gene_source=HGNC:25583 | ||
| + | |gene_symbol=ARMC4 | ||
| + | |gene_synonyms=CILD23 DKFZP434P1735 FLJ10376 FLJ10817 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:25583 | ||
|nearest_ensembl=ENSG00000169126 | |nearest_ensembl=ENSG00000169126 | ||
|nearest_promoter_id=NM_018076 | |nearest_promoter_id=NM_018076 | ||
|nearest_refseq=NM_018076 | |nearest_refseq=NM_018076 | ||
|nearest_unigene=Hs.127530 | |nearest_unigene=Hs.127530 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=27999039 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000305242.9 NM_018076 uc001itz.3 BC085611 AK001679 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_108799.1 | |tss_id=hg_108799.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5T2S8 | ||
}} | }} | ||
Revision as of 23:59, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000305242.9 NM_018076 uc001itz.3 BC085611 AK001679 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000305242.9:0 NM_018076:0 uc001itz.3:0 BC085611:0 AK001679:0 NM_001290020:134 AK292521:178 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_018076 |
| Entrez ID: | 55130 |
| Nearest Unigene: | Hs.127530 |
| Nearest Refseq: | NM_018076 |
| Nearest Ensembl: | ENSG00000169126 |
| Gene Name: | armadillo repeat containing 4 |
| Gene Alias: | CILD23 |
| Gene Description: | armadillo repeat containing 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.676617 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
