Difference between revisions of "TSS:Hg 109096.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.185 |distance_to_tss=118 |entrez_id=56288 |gc_percent=0.840796 |gene_alias=ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |Baz= | ||
| + | |PAR3= | ||
| + | |PAR3alpha= | ||
| + | |PARD-3= | ||
| + | |PARD3A= | ||
| + | |PPP1R118= | ||
| + | |SE2-5L16= | ||
| + | |SE2-5LT1= | ||
| + | |SE2-5T2= | ||
| + | |all_trans=BC071566:-62 AF196185:-73 AF196186:-73 ENST00000374789.7:-111 ENST00000374788.7:-111 ENST00000346874.8:-111 ENST00000374794.7:-111 ENST00000350537.8:-111 ENST00000374790.7:-111 ENST00000374776.5:-111 ENST00000374773.5:-111 uc010qel.3:-111 uc010qen.3:-111 uc010qek.3:-111 uc010qej.3:-111 uc057srn.1:-111 uc010qeq.3:-111 uc001ixq.3:-111 uc057srq.1:-111 ENST00000545260.5:-115 ENST00000545693.5:-115 ENST00000340077.9:-115 NM_001184791:-115 NM_001184789:-115 NM_001184788:-115 NM_001184787:-115 NM_001184786:-115 NM_001184785:-115 NM_001184790:-115 NM_019619:-115 NM_001184794:-115 NM_001184792:-115 NM_001184793:-115 uc010qep.2:-115 uc010qem.2:-115 uc001ixr.2:-115 AF454058:-115 AB073671:209 AF252293:209 AF332593:209 AF467002:209 AF467003:209 AF467004:209 AF467005:209 AF467006:209 AF332592:209 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.185 | |cpg_percent=0.185 | ||
| + | |distance=-62 | ||
|distance_to_tss=118 | |distance_to_tss=118 | ||
| + | |end=34815210 | ||
|entrez_id=56288 | |entrez_id=56288 | ||
|gc_percent=0.840796 | |gc_percent=0.840796 | ||
|gene_alias=ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 | |gene_alias=ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 | ||
|gene_description=par-3 family cell polarity regulator | |gene_description=par-3 family cell polarity regulator | ||
| − | |gene_name=PARD3 | + | |gene_id=56288 |
| + | |gene_name=par-3 family cell polarity regulator | ||
| + | |gene_source=HGNC:16051 | ||
| + | |gene_symbol=PARD3 | ||
| + | |gene_synonyms=ASIP Baz Bazooka PAR3 PARD3A PPP1R118 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:16051 | ||
|nearest_ensembl=ENSG00000148498 | |nearest_ensembl=ENSG00000148498 | ||
|nearest_promoter_id=NM_001184791 | |nearest_promoter_id=NM_001184791 | ||
|nearest_refseq=NM_019619 | |nearest_refseq=NM_019619 | ||
|nearest_unigene=Hs.131489 | |nearest_unigene=Hs.131489 | ||
| + | |num_trans=46 | ||
| + | |species=human | ||
| + | |start=34815203 | ||
| + | |strand=- | ||
| + | |transcript_name=BC071566 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109096.1 | |tss_id=hg_109096.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:12, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC071566 |
|---|---|
| Distance: | -62 |
| Num_trans: | 46 |
| All_trans: | BC071566:-62 AF196185:-73 AF196186:-73 ENST00000374789.7:-111 ENST00000374788.7:-111 ENST00000346874.8:-111 ENST00000374794.7:-111 ENST00000350537.8:-111 ENST00000374790.7:-111 ENST00000374776.5:-111 ENST00000374773.5:-111 uc010qel.3:-111 uc010qen.3:-111 uc010qek.3:-111 uc010qej.3:-111 uc057srn.1:-111 uc010qeq.3:-111 uc001ixq.3:-111 uc057srq.1:-111 ENST00000545260.5:-115 ENST00000545693.5:-115 ENST00000340077.9:-115 NM_001184791:-115 NM_001184789:-115 NM_001184788:-115 NM_001184787:-115 NM_001184786:-115 NM_001184785:-115 NM_001184790:-115 NM_019619:-115 NM_001184794:-115 NM_001184792:-115 NM_001184793:-115 uc010qep.2:-115 uc010qem.2:-115 uc001ixr.2:-115 AF454058:-115 AB073671:209 AF252293:209 AF332593:209 AF467002:209 AF467003:209 AF467004:209 AF467005:209 AF467006:209 AF332592:209 |
TATA-Box annotation
| Distance to TSS: | 118 |
|---|---|
| Nearest PromoterID: | NM_001184791 |
| Entrez ID: | 56288 |
| Nearest Unigene: | Hs.131489 |
| Nearest Refseq: | NM_019619 |
| Nearest Ensembl: | ENSG00000148498 |
| Gene Name: | par-3 family cell polarity regulator |
| Gene Alias: | ASIP |
| Gene Description: | par-3 family cell polarity regulator |
| Gene Type: | protein-coding |
| CpG%: | 0.185 |
| GC%: | 0.840796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
