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Difference between revisions of "TSS:Hg 109097.1"

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(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=27 |entrez_id=56288 |gc_percent=0.810945 |gene_alias=ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 |g...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|Baz=
 +
|PAR3=
 +
|PAR3alpha=
 +
|PARD-3=
 +
|PARD3A=
 +
|PPP1R118=
 +
|SE2-5L16=
 +
|SE2-5LT1=
 +
|SE2-5T2=
 +
|all_trans=ENST00000545260.5:0 ENST00000545693.5:0 ENST00000374789.7:0 ENST00000374788.7:0 ENST00000346874.8:0 ENST00000374794.7:0 ENST00000350537.8:0 ENST00000374790.7:0 ENST00000374776.5:0 ENST00000340077.9:0 ENST00000374773.5:0 NM_001184791:0 NM_001184789:0 NM_001184788:0 NM_001184787:0 NM_001184786:0 NM_001184785:0 NM_001184790:0 NM_019619:0 NM_001184794:0 NM_001184792:0 NM_001184793:0 uc010qep.2:0 uc010qem.2:0 uc010qel.3:0 uc010qen.3:0 uc010qek.3:0 uc010qej.3:0 uc057srn.1:0 uc010qeq.3:0 uc001ixq.3:0 uc001ixr.2:0 uc057srq.1:0 AF196185:0 BC071566:0 AF196186:0 AF454058:0 AB073671:263 AF252293:263 AF332593:263 AF467002:263 AF467003:263 AF467004:263 AF467005:263 AF467006:263 AF332592:263
 +
|chr=chr10
 
|cpg_percent=0.13
 
|cpg_percent=0.13
 +
|distance=0
 
|distance_to_tss=27
 
|distance_to_tss=27
 +
|end=34815339
 
|entrez_id=56288
 
|entrez_id=56288
 
|gc_percent=0.810945
 
|gc_percent=0.810945
 
|gene_alias=ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2
 
|gene_alias=ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2
 
|gene_description=par-3 family cell polarity regulator
 
|gene_description=par-3 family cell polarity regulator
−
|gene_name=PARD3
+
|gene_id=56288
 +
|gene_name=par-3 family cell polarity regulator
 +
|gene_source=HGNC:16051
 +
|gene_symbol=PARD3
 +
|gene_synonyms=ASIP Baz Bazooka PAR3 PARD3A PPP1R118
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:16051
 
|nearest_ensembl=ENSG00000148498
 
|nearest_ensembl=ENSG00000148498
 
|nearest_promoter_id=NM_001184791
 
|nearest_promoter_id=NM_001184791
 
|nearest_refseq=NM_019619
 
|nearest_refseq=NM_019619
 
|nearest_unigene=Hs.131489
 
|nearest_unigene=Hs.131489
 +
|num_trans=46
 +
|species=human
 +
|start=34815257
 +
|strand=-
 +
|transcript_name=ENST00000545260.5 ENST00000545693.5 ENST00000374789.7 ENST00000374788.7 ENST00000346874.8 ENST00000374794.7 ENST00000350537.8 ENST00000374790.7 ENST00000374776.5 ENST00000340077.9 ENST00000374773.5 NM_001184791 NM_001184789 NM_001184788 NM_001184787 NM_001184786 NM_001184785 NM_001184790 NM_019619 NM_001184794 NM_001184792 NM_001184793 uc010qep.2 uc010qem.2 uc010qel.3 uc010qen.3 uc010qek.3 uc010qej.3 uc057srn.1 uc010qeq.3 uc001ixq.3 uc001ixr.2 uc057srq.1 AF196185 BC071566 AF196186 AF454058
 +
|tss_classification=yes
 
|tss_id=hg_109097.1
 
|tss_id=hg_109097.1
 +
|tss_score=1
 +
|uniprot_id=Q5VWU8 Q5VWV2 Q8IX27 Q8TEW0
 
}}
 
}}

Revision as of 00:12, 9 March 2018

Basic information about the TSS

TSS ID:hg_109097.1
Species:human
Chr:chr10
TSS Classification:yes
Start:34815257
End:34815339
Strand:-
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation

Transcript_name:ENST00000545260.5 ENST00000545693.5 ENST00000374789.7 ENST00000374788.7 ENST00000346874.8 ENST00000374794.7 ENST00000350537.8 ENST00000374790.7 ENST00000374776.5 ENST00000340077.9 ENST00000374773.5 NM_001184791 NM_001184789 NM_001184788 NM_001184787 NM_001184786 NM_001184785 NM_001184790 NM_019619 NM_001184794 NM_001184792 NM_001184793 uc010qep.2 uc010qem.2 uc010qel.3 uc010qen.3 uc010qek.3 uc010qej.3 uc057srn.1 uc010qeq.3 uc001ixq.3 uc001ixr.2 uc057srq.1 AF196185 BC071566 AF196186 AF454058
Distance:0
GeneID:56288
HGNC/MGI_ID:HGNC:16051
UniProt_ID:Q5VWU8 Q5VWV2 Q8IX27 Q8TEW0
Gene_name:par-3 family cell polarity regulator
Gene_symbol:PARD3
Gene_synonyms:ASIP Baz Bazooka PAR3 PARD3A PPP1R118
Gene_source:HGNC:16051



Transcript annotation

Transcript_name:ENST00000545260.5 ENST00000545693.5 ENST00000374789.7 ENST00000374788.7 ENST00000346874.8 ENST00000374794.7 ENST00000350537.8 ENST00000374790.7 ENST00000374776.5 ENST00000340077.9 ENST00000374773.5 NM_001184791 NM_001184789 NM_001184788 NM_001184787 NM_001184786 NM_001184785 NM_001184790 NM_019619 NM_001184794 NM_001184792 NM_001184793 uc010qep.2 uc010qem.2 uc010qel.3 uc010qen.3 uc010qek.3 uc010qej.3 uc057srn.1 uc010qeq.3 uc001ixq.3 uc001ixr.2 uc057srq.1 AF196185 BC071566 AF196186 AF454058
Distance:0
Num_trans:46
All_trans:ENST00000545260.5:0 ENST00000545693.5:0 ENST00000374789.7:0 ENST00000374788.7:0 ENST00000346874.8:0 ENST00000374794.7:0 ENST00000350537.8:0 ENST00000374790.7:0 ENST00000374776.5:0 ENST00000340077.9:0 ENST00000374773.5:0 NM_001184791:0 NM_001184789:0 NM_001184788:0 NM_001184787:0 NM_001184786:0 NM_001184785:0 NM_001184790:0 NM_019619:0 NM_001184794:0 NM_001184792:0 NM_001184793:0 uc010qep.2:0 uc010qem.2:0 uc010qel.3:0 uc010qen.3:0 uc010qek.3:0 uc010qej.3:0 uc057srn.1:0 uc010qeq.3:0 uc001ixq.3:0 uc001ixr.2:0 uc057srq.1:0 AF196185:0 BC071566:0 AF196186:0 AF454058:0 AB073671:263 AF252293:263 AF332593:263 AF467002:263 AF467003:263 AF467004:263 AF467005:263 AF467006:263 AF332592:263



TATA-Box annotation

Distance to TSS:27
Nearest PromoterID:NM_001184791
Entrez ID:56288
Nearest Unigene:Hs.131489
Nearest Refseq:NM_019619
Nearest Ensembl:ENSG00000148498
Gene Name:par-3 family cell polarity regulator
Gene Alias:ASIP
Gene Description:par-3 family cell polarity regulator
Gene Type:protein-coding
CpG%:0.13
GC%:0.810945
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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