Difference between revisions of "TSS:Hg 109451.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=43 |entrez_id=220965 |gc_percent=0.616915 |gene_alias=FAM13C1 |gene_description=family with sequence similarity 13 member C |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000618804.4:0 ENST00000618427.4:0 ENST00000614220.4:0 ENST00000621119.4:0 ENST00000622363.4:0 ENST00000611933.4:0 ENST00000435852.6:0 ENST00000619059.4:0 NM_001166698:0 NM_198215:0 NM_001001971:0 uc031wie.2:0 uc031wid.2:0 uc057tjz.1:0 uc057tka.1:0 uc057tkb.1:0 uc031wif.2:0 uc031wig.2:0 uc057tkl.1:0 AK316542:0 BC036453:0 BC064431:0 AK289796:0 AK294805:0 ENST00000422313.6:43 uc001jkp.4:43 KJ895852:43 KJ900467:43 DQ894404:43 EU176262:43 CU687880:43 ENST00000470220.5:-101 uc057tkj.1:-101 ENST00000503444.1:-230 uc057tko.1:-230 ENST00000468840.6:-303 NM_001143773:-303 uc010qie.3:-303 AK299924:-303 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=0 | ||
|distance_to_tss=43 | |distance_to_tss=43 | ||
| + | |end=59362600 | ||
|entrez_id=220965 | |entrez_id=220965 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_name=FAM13C | + | |gene_id=220965 |
| + | |gene_name=family with sequence similarity 13 member C | ||
| + | |gene_source=HGNC:19371 | ||
| + | |gene_symbol=FAM13C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
|nearest_promoter_id=NM_001347851 | |nearest_promoter_id=NM_001347851 | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| + | |num_trans=39 | ||
| + | |species=human | ||
| + | |start=59362502 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000618804.4 ENST00000618427.4 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001166698 NM_198215 NM_001001971 uc031wie.2 uc031wid.2 uc057tjz.1 uc057tka.1 uc057tkb.1 uc031wif.2 uc031wig.2 uc057tkl.1 AK316542 BC036453 BC064431 AK289796 AK294805 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109451.1 | |tss_id=hg_109451.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087X0M7 A0A087X216 A0A087X2G4 A8K181 B7Z2K3 Q8NE31 | ||
}} | }} | ||
Revision as of 00:28, 9 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000618804.4 ENST00000618427.4 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001166698 NM_198215 NM_001001971 uc031wie.2 uc031wid.2 uc057tjz.1 uc057tka.1 uc057tkb.1 uc031wif.2 uc031wig.2 uc057tkl.1 AK316542 BC036453 BC064431 AK289796 AK294805 |
|---|---|
| Distance: | 0 |
| Num_trans: | 39 |
| All_trans: | ENST00000618804.4:0 ENST00000618427.4:0 ENST00000614220.4:0 ENST00000621119.4:0 ENST00000622363.4:0 ENST00000611933.4:0 ENST00000435852.6:0 ENST00000619059.4:0 NM_001166698:0 NM_198215:0 NM_001001971:0 uc031wie.2:0 uc031wid.2:0 uc057tjz.1:0 uc057tka.1:0 uc057tkb.1:0 uc031wif.2:0 uc031wig.2:0 uc057tkl.1:0 AK316542:0 BC036453:0 BC064431:0 AK289796:0 AK294805:0 ENST00000422313.6:43 uc001jkp.4:43 KJ895852:43 KJ900467:43 DQ894404:43 EU176262:43 CU687880:43 ENST00000470220.5:-101 uc057tkj.1:-101 ENST00000503444.1:-230 uc057tko.1:-230 ENST00000468840.6:-303 NM_001143773:-303 uc010qie.3:-303 AK299924:-303 |
TATA-Box annotation
| Distance to TSS: | 43 |
|---|---|
| Nearest PromoterID: | NM_001347851 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
