Difference between revisions of "TSS:Hg 109456.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.06 |distance_to_tss=105 |entrez_id=220965 |gc_percent=0.616915 |gene_alias=FAM13C1 |gene_description=family with sequence similarity 13 member C |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000503444.1:-27 uc057tko.1:-27 ENST00000470220.5:92 uc057tkj.1:92 ENST00000468840.6:-100 NM_001143773:-100 uc010qie.3:-100 AK299924:-100 ENST00000618427.4:199 ENST00000611933.4:199 NM_001166698:199 NM_198215:199 NM_001001971:199 uc031wid.2:199 uc031wif.2:199 BC064431:199 ENST00000622363.4:203 uc057tkb.1:203 AK316542:203 ENST00000621119.4:229 uc057tka.1:229 ENST00000618804.4:243 uc031wie.2:243 BC036453:243 ENST00000614220.4:246 uc057tjz.1:246 ENST00000619059.4:271 uc057tkl.1:271 AK289796:273 AK294805:284 ENST00000435852.6:285 uc031wig.2:285 ENST00000422313.6:333 uc001jkp.4:333 KJ895852:333 KJ900467:333 DQ894404:333 EU176262:333 CU687880:333 ENST00000512919.5:-378 uc057tkn.1:-378 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| + | |distance=-27 | ||
|distance_to_tss=105 | |distance_to_tss=105 | ||
| + | |end=59362803 | ||
|entrez_id=220965 | |entrez_id=220965 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=FAM13C1 | |gene_alias=FAM13C1 | ||
|gene_description=family with sequence similarity 13 member C | |gene_description=family with sequence similarity 13 member C | ||
| − | |gene_name=FAM13C | + | |gene_id=220965 |
| + | |gene_name=family with sequence similarity 13 member C | ||
| + | |gene_source=HGNC:19371 | ||
| + | |gene_symbol=FAM13C | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19371 | ||
|nearest_ensembl=ENSG00000148541 | |nearest_ensembl=ENSG00000148541 | ||
|nearest_promoter_id=NM_001347847 | |nearest_promoter_id=NM_001347847 | ||
|nearest_refseq=NM_198215 | |nearest_refseq=NM_198215 | ||
|nearest_unigene=Hs.607594 | |nearest_unigene=Hs.607594 | ||
| + | |num_trans=41 | ||
| + | |species=human | ||
| + | |start=59362792 | ||
| + | |strand=- | ||
| + | |transcript_name=ENST00000503444.1 uc057tko.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_109456.1 | |tss_id=hg_109456.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 00:28, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000503444.1 uc057tko.1 |
|---|---|
| Distance: | -27 |
| Num_trans: | 41 |
| All_trans: | ENST00000503444.1:-27 uc057tko.1:-27 ENST00000470220.5:92 uc057tkj.1:92 ENST00000468840.6:-100 NM_001143773:-100 uc010qie.3:-100 AK299924:-100 ENST00000618427.4:199 ENST00000611933.4:199 NM_001166698:199 NM_198215:199 NM_001001971:199 uc031wid.2:199 uc031wif.2:199 BC064431:199 ENST00000622363.4:203 uc057tkb.1:203 AK316542:203 ENST00000621119.4:229 uc057tka.1:229 ENST00000618804.4:243 uc031wie.2:243 BC036453:243 ENST00000614220.4:246 uc057tjz.1:246 ENST00000619059.4:271 uc057tkl.1:271 AK289796:273 AK294805:284 ENST00000435852.6:285 uc031wig.2:285 ENST00000422313.6:333 uc001jkp.4:333 KJ895852:333 KJ900467:333 DQ894404:333 EU176262:333 CU687880:333 ENST00000512919.5:-378 uc057tkn.1:-378 |
TATA-Box annotation
| Distance to TSS: | 105 |
|---|---|
| Nearest PromoterID: | NM_001347847 |
| Entrez ID: | 220965 |
| Nearest Unigene: | Hs.607594 |
| Nearest Refseq: | NM_198215 |
| Nearest Ensembl: | ENSG00000148541 |
| Gene Name: | family with sequence similarity 13 member C |
| Gene Alias: | FAM13C1 |
| Gene Description: | family with sequence similarity 13 member C |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
