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Difference between revisions of "TSS:Hg 109520.1"

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(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=376 |entrez_id=288 |gc_percent=0.412935 |gene_alias=ANKYRIN-G|MRT37 |gene_description=ankyrin 3 |gene_name=ANK3 |gene_type=prot...")
 
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{{TSSDetail
 
{{TSSDetail
 +
|MRT37=
 +
|all_trans=ENST00000280772.6:-120 uc001jky.4:-120 U13616:-120 NM_020987:-266
 +
|chr=chr10
 
|cpg_percent=0.005
 
|cpg_percent=0.005
 +
|distance=-120
 
|distance_to_tss=376
 
|distance_to_tss=376
 +
|end=60389610
 
|entrez_id=288
 
|entrez_id=288
 
|gc_percent=0.412935
 
|gc_percent=0.412935
 
|gene_alias=ANKYRIN-G|MRT37
 
|gene_alias=ANKYRIN-G|MRT37
 
|gene_description=ankyrin 3
 
|gene_description=ankyrin 3
|gene_name=ANK3
+
|gene_id=288
 +
|gene_name="ankyrin 3, node of Ranvier (ankyrin G)"
 +
|gene_source=HGNC:494
 +
|gene_symbol=ANK3
 +
|gene_synonyms=
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 +
|hgnc_mgi_id=HGNC:494
 
|nearest_ensembl=ENSG00000151150
 
|nearest_ensembl=ENSG00000151150
 
|nearest_promoter_id=NM_020987
 
|nearest_promoter_id=NM_020987
 
|nearest_refseq=NM_001149
 
|nearest_refseq=NM_001149
 
|nearest_unigene=Hs.499725
 
|nearest_unigene=Hs.499725
 +
|num_trans=4
 +
|species=human
 +
|start=60389605
 +
|strand=-
 
|tata_box="55(CTTTTTAAATGC,+,0.00)"
 
|tata_box="55(CTTTTTAAATGC,+,0.00)"
 +
|transcript_name=ENST00000280772.6 uc001jky.4 U13616
 +
|tss_classification=yes
 
|tss_id=hg_109520.1
 
|tss_id=hg_109520.1
 +
|tss_score=1
 +
|uniprot_id=Q12955
 
}}
 
}}

Revision as of 00:30, 9 March 2018

Basic information about the TSS


TSS ID:hg_109520.1
Species:human
Chr:chr10
TSS Classification:yes
Start:60389605
End:60389610
Strand:-
TSS Score:1
Start of the center position in the TSS region:
End of the center position in the TSS region:



Gene and protein annotation


Transcript_name:ENST00000280772.6 uc001jky.4 U13616
Distance:-120
GeneID:288
HGNC/MGI_ID:HGNC:494
UniProt_ID:Q12955
Gene_name:"ankyrin 3, node of Ranvier (ankyrin G)"
Gene_symbol:ANK3
Gene_synonyms:
Gene_source:HGNC:494



Transcript annotation


Transcript_name:ENST00000280772.6 uc001jky.4 U13616
Distance:-120
Num_trans:4
All_trans:ENST00000280772.6:-120 uc001jky.4:-120 U13616:-120 NM_020987:-266



TATA-Box annotation


Distance to TSS:376
Nearest PromoterID:NM_020987
Entrez ID:288
Nearest Unigene:Hs.499725
Nearest Refseq:NM_001149
Nearest Ensembl:ENSG00000151150
Gene Name:"ankyrin 3, node of Ranvier (ankyrin G)"
Gene Alias:ANKYRIN-G
Gene Description:ankyrin 3
Gene Type:protein-coding
CpG%:0.005
GC%:0.412935
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):"55(CTTTTTAAATGC,+,0.00)"