Difference between revisions of "TSS:Hg 109535.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=-238 |entrez_id=288 |gc_percent=0.363184 |gene_alias=ANKYRIN-G|MRT37 |gene_description=ankyrin 3 |gene_name=ANK3 |gene_type=protein...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MRT37= | ||
| + | |all_trans=NM_020987:346 ENST00000280772.6:492 uc001jky.4:492 U13616:492 | ||
| + | |chr=chr10 | ||
|cpg_percent=0 | |cpg_percent=0 | ||
| + | |distance=346 | ||
|distance_to_tss=-238 | |distance_to_tss=-238 | ||
| + | |end=60390222 | ||
|entrez_id=288 | |entrez_id=288 | ||
|gc_percent=0.363184 | |gc_percent=0.363184 | ||
|gene_alias=ANKYRIN-G|MRT37 | |gene_alias=ANKYRIN-G|MRT37 | ||
|gene_description=ankyrin 3 | |gene_description=ankyrin 3 | ||
| − | |gene_name=ANK3 | + | |gene_id=288 |
| + | |gene_name="ankyrin 3, node of Ranvier (ankyrin G)" | ||
| + | |gene_source=HGNC:494 | ||
| + | |gene_symbol=ANK3 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:494 | ||
|nearest_ensembl=ENSG00000151150 | |nearest_ensembl=ENSG00000151150 | ||
|nearest_promoter_id=NM_001320874 | |nearest_promoter_id=NM_001320874 | ||
|nearest_refseq=NM_001149 | |nearest_refseq=NM_001149 | ||
|nearest_unigene=Hs.499725 | |nearest_unigene=Hs.499725 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=60390221 | ||
| + | |strand=- | ||
|tata_box="-67(GTTTTTAAAAGA,-,0.00),-66(TTTTTAAAAGAC,+,0.00)" | |tata_box="-67(GTTTTTAAAAGA,-,0.00),-66(TTTTTAAAAGAC,+,0.00)" | ||
| + | |transcript_name=NM_020987 | ||
| + | |tss_classification=no | ||
|tss_id=hg_109535.1 | |tss_id=hg_109535.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q12955 | ||
}} | }} | ||
Revision as of 00:31, 9 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_020987 |
|---|---|
| Distance: | 346 |
| Num_trans: | 4 |
| All_trans: | NM_020987:346 ENST00000280772.6:492 uc001jky.4:492 U13616:492 |
TATA-Box annotation
| Distance to TSS: | -238 |
|---|---|
| Nearest PromoterID: | NM_001320874 |
| Entrez ID: | 288 |
| Nearest Unigene: | Hs.499725 |
| Nearest Refseq: | NM_001149 |
| Nearest Ensembl: | ENSG00000151150 |
| Gene Name: | "ankyrin 3, node of Ranvier (ankyrin G)" |
| Gene Alias: | ANKYRIN-G |
| Gene Description: | ankyrin 3 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.363184 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-67(GTTTTTAAAAGA,-,0.00),-66(TTTTTAAAAGAC,+,0.00)" |
