Difference between revisions of "TSS:Hg 87556.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |RET/PCM-1= | ||
|all_trans=ENST00000325083.12:26 uc003wyi.5:26 L27841:33 ENST00000327578.9:43 NM_006197:43 NM_001315507:43 NM_001315508:43 uc064kpj.1:43 ENST00000518930.1:154 uc064kpk.1:154 ENST00000517545.5:176 ENST00000517730.5:176 uc064kpl.1:176 uc064kpm.1:176 BC098391:176 AK307583:176 ENST00000518537.5:185 uc003wyh.4:185 BC000453:185 ENST00000518936.5:192 uc064kpn.1:192 BC065022:192 ENST00000523055.5:196 uc064kpo.1:196 BC027477:196 ENST00000519253.5:214 uc011kyh.3:214 BC140946:214 | |all_trans=ENST00000325083.12:26 uc003wyi.5:26 L27841:33 ENST00000327578.9:43 NM_006197:43 NM_001315507:43 NM_001315508:43 uc064kpj.1:43 ENST00000518930.1:154 uc064kpk.1:154 ENST00000517545.5:176 ENST00000517730.5:176 uc064kpl.1:176 uc064kpm.1:176 BC098391:176 AK307583:176 ENST00000518537.5:185 uc003wyh.4:185 BC000453:185 ENST00000518936.5:192 uc064kpn.1:192 BC065022:192 ENST00000523055.5:196 uc064kpo.1:196 BC027477:196 ENST00000519253.5:214 uc011kyh.3:214 BC140946:214 | ||
|chr=chr8 | |chr=chr8 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-51 | |distance_to_tss=-51 | ||
|end=17922814 | |end=17922814 | ||
| + | |end_of_center_position=17922806 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=17922797 | |start=17922797 | ||
| + | |start_of_center_position=17922805 | ||
|strand=+ | |strand=+ | ||
|tata_box="4(GCTTAAAGAGCC,+,0.00)" | |tata_box="4(GCTTAAAGAGCC,+,0.00)" | ||
Revision as of 15:15, 10 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 17922805 |
|---|---|
| End of the center position in the TSS region: | 17922806 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325083.12 uc003wyi.5 |
|---|---|
| Distance: | 26 |
| Num_trans: | 28 |
| All_trans: | ENST00000325083.12:26 uc003wyi.5:26 L27841:33 ENST00000327578.9:43 NM_006197:43 NM_001315507:43 NM_001315508:43 uc064kpj.1:43 ENST00000518930.1:154 uc064kpk.1:154 ENST00000517545.5:176 ENST00000517730.5:176 uc064kpl.1:176 uc064kpm.1:176 BC098391:176 AK307583:176 ENST00000518537.5:185 uc003wyh.4:185 BC000453:185 ENST00000518936.5:192 uc064kpn.1:192 BC065022:192 ENST00000523055.5:196 uc064kpo.1:196 BC027477:196 ENST00000519253.5:214 uc011kyh.3:214 BC140946:214 |
TATA-Box annotation
| Distance to TSS: | -51 |
|---|---|
| Nearest PromoterID: | NM_006197 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "4(GCTTAAAGAGCC,+,0.00)" |
