Difference between revisions of "TSS:Hg 87557.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000325083.12:0 ENST00000327578.9:0 NM_006197:0 NM_001315507:0 NM_001315508:0 uc003wyi.5:0 uc064kpj.1:0 L27841:0 ENST00000518930.1:102 uc064kpk.1:1...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |RET/PCM-1= | ||
|all_trans=ENST00000325083.12:0 ENST00000327578.9:0 NM_006197:0 NM_001315507:0 NM_001315508:0 uc003wyi.5:0 uc064kpj.1:0 L27841:0 ENST00000518930.1:102 uc064kpk.1:102 ENST00000517545.5:124 ENST00000517730.5:124 uc064kpl.1:124 uc064kpm.1:124 BC098391:124 AK307583:124 ENST00000518537.5:133 uc003wyh.4:133 BC000453:133 ENST00000518936.5:140 uc064kpn.1:140 BC065022:140 ENST00000523055.5:144 uc064kpo.1:144 BC027477:144 ENST00000519253.5:162 uc011kyh.3:162 BC140946:162 | |all_trans=ENST00000325083.12:0 ENST00000327578.9:0 NM_006197:0 NM_001315507:0 NM_001315508:0 uc003wyi.5:0 uc064kpj.1:0 L27841:0 ENST00000518930.1:102 uc064kpk.1:102 ENST00000517545.5:124 ENST00000517730.5:124 uc064kpl.1:124 uc064kpm.1:124 BC098391:124 AK307583:124 ENST00000518537.5:133 uc003wyh.4:133 BC000453:133 ENST00000518936.5:140 uc064kpn.1:140 BC065022:140 ENST00000523055.5:144 uc064kpo.1:144 BC027477:144 ENST00000519253.5:162 uc011kyh.3:162 BC140946:162 | ||
|chr=chr8 | |chr=chr8 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=-5 | |distance_to_tss=-5 | ||
|end=17922866 | |end=17922866 | ||
| + | |end_of_center_position=17922852 | ||
|entrez_id=5108 | |entrez_id=5108 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=PTC4 | + | |gene_alias=PTC4 |
|gene_description=pericentriolar material 1 | |gene_description=pericentriolar material 1 | ||
|gene_id=5108 | |gene_id=5108 | ||
| Line 24: | Line 26: | ||
|species=human | |species=human | ||
|start=17922837 | |start=17922837 | ||
| + | |start_of_center_position=17922851 | ||
|strand=+ | |strand=+ | ||
|tata_box="-42(GCTTAAAGAGCC,+,0.00)" | |tata_box="-42(GCTTAAAGAGCC,+,0.00)" | ||
Revision as of 15:15, 10 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 17922851 |
|---|---|
| End of the center position in the TSS region: | 17922852 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000325083.12 ENST00000327578.9 NM_006197 NM_001315507 NM_001315508 uc003wyi.5 uc064kpj.1 L27841 |
|---|---|
| Distance: | 0 |
| Num_trans: | 28 |
| All_trans: | ENST00000325083.12:0 ENST00000327578.9:0 NM_006197:0 NM_001315507:0 NM_001315508:0 uc003wyi.5:0 uc064kpj.1:0 L27841:0 ENST00000518930.1:102 uc064kpk.1:102 ENST00000517545.5:124 ENST00000517730.5:124 uc064kpl.1:124 uc064kpm.1:124 BC098391:124 AK307583:124 ENST00000518537.5:133 uc003wyh.4:133 BC000453:133 ENST00000518936.5:140 uc064kpn.1:140 BC065022:140 ENST00000523055.5:144 uc064kpo.1:144 BC027477:144 ENST00000519253.5:162 uc011kyh.3:162 BC140946:162 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_006197 |
| Entrez ID: | 5108 |
| Nearest Unigene: | Hs.491148 |
| Nearest Refseq: | NM_006197 |
| Nearest Ensembl: | ENSG00000078674 |
| Gene Name: | pericentriolar material 1 |
| Gene Alias: | PTC4 |
| Gene Description: | pericentriolar material 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-42(GCTTAAAGAGCC,+,0.00)" |
