Difference between revisions of "TSS:Hg 623.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000251546.8:-27 NM_183412:-27 NM_001304791:-27 uc001ask.4:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NM_033182:432 NM_001014765:...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FBX30= | ||
| + | |FBX6A= | ||
| + | |Fbx44= | ||
| + | |Fbxo6a= | ||
|all_trans=ENST00000251546.8:-27 NM_183412:-27 NM_001304791:-27 uc001ask.4:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NM_033182:432 NM_001014765:432 NM_183413:432 NM_001304790:432 NR_130909:432 uc057cgl.1:432 uc001asl.3:432 CR749368:444 AK296025:452 AK301418:452 AK316284:452 ENST00000376768.5:456 uc010oar.3:456 AK316347:475 ENST00000251547.9:476 uc001asm.4:476 AY040878:476 AK293721:484 ENST00000376760.5:485 ENST00000376762.8:485 uc057cgm.1:485 uc001asn.4:485 BC007832:485 AK294053:500 | |all_trans=ENST00000251546.8:-27 NM_183412:-27 NM_001304791:-27 uc001ask.4:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NM_033182:432 NM_001014765:432 NM_183413:432 NM_001304790:432 NR_130909:432 uc057cgl.1:432 uc001asl.3:432 CR749368:444 AK296025:452 AK301418:452 AK316284:452 ENST00000376768.5:456 uc010oar.3:456 AK316347:475 ENST00000251547.9:476 uc001asm.4:476 AY040878:476 AK293721:484 ENST00000376760.5:485 ENST00000376762.8:485 uc057cgm.1:485 uc001asn.4:485 BC007832:485 AK294053:500 | ||
|chr=chr1 | |chr=chr1 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=38 | |distance_to_tss=38 | ||
|end=11654425 | |end=11654425 | ||
| + | |end_of_center_position=11654414 | ||
|entrez_id=93611 | |entrez_id=93611 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
| − | |gene_alias=FBG3 | + | |gene_alias=FBG3 |
|gene_description=F-box protein 44 | |gene_description=F-box protein 44 | ||
|gene_id=93611 | |gene_id=93611 | ||
| Line 24: | Line 29: | ||
|species=human | |species=human | ||
|start=11654401 | |start=11654401 | ||
| + | |start_of_center_position=11654413 | ||
|strand=+ | |strand=+ | ||
|tata_box="37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00)" | |tata_box="37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00)" | ||
Revision as of 17:28, 10 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11654413 |
|---|---|
| End of the center position in the TSS region: | 11654414 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000251546.8 NM_183412 NM_001304791 uc001ask.4 AK055344 |
|---|---|
| Distance: | -27 |
| Num_trans: | 31 |
| All_trans: | ENST00000251546.8:-27 NM_183412:-27 NM_001304791:-27 uc001ask.4:-27 AK055344:-27 ENST00000425796.5:432 ENST00000376770.5:432 NM_033182:432 NM_001014765:432 NM_183413:432 NM_001304790:432 NR_130909:432 uc057cgl.1:432 uc001asl.3:432 CR749368:444 AK296025:452 AK301418:452 AK316284:452 ENST00000376768.5:456 uc010oar.3:456 AK316347:475 ENST00000251547.9:476 uc001asm.4:476 AY040878:476 AK293721:484 ENST00000376760.5:485 ENST00000376762.8:485 uc057cgm.1:485 uc001asn.4:485 BC007832:485 AK294053:500 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NM_001304791 |
| Entrez ID: | 93611 |
| Nearest Unigene: | Hs.556006 |
| Nearest Refseq: | NM_033182 |
| Nearest Ensembl: | ENSG00000132879 |
| Gene Name: | F-box protein 44 |
| Gene Alias: | FBG3 |
| Gene Description: | F-box protein 44 |
| Gene Type: | protein-coding |
| CpG%: | 0.165 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "37(GCCTCTTAAAGG,-,0.00),38(CCTCTTAAAGGC,+,0.00),39(CTCTTAAAGGCC,+,0.00)" |
