Difference between revisions of "TSS:Hg 233740.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BX647671:-27 ENST00000354566.7:-80 ENST00000389959.8:-80 uc058gdw.1:-80 uc009yvj.5:-80 AK127504:-80 BX648068:479 |chr=chr11 |cpg_percent=0 |distance=-27...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |EXO4= | ||
| + | |PPP1R151= | ||
| + | |SGA72M= | ||
| + | |SLP2= | ||
| + | |SLP2A= | ||
|all_trans=BX647671:-27 ENST00000354566.7:-80 ENST00000389959.8:-80 uc058gdw.1:-80 uc009yvj.5:-80 AK127504:-80 BX648068:479 | |all_trans=BX647671:-27 ENST00000354566.7:-80 ENST00000389959.8:-80 uc058gdw.1:-80 uc009yvj.5:-80 AK127504:-80 BX648068:479 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=-7038 | |distance_to_tss=-7038 | ||
|end=85726388 | |end=85726388 | ||
| + | |end_of_center_position=19210242 | ||
|entrez_id=54843 | |entrez_id=54843 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
| − | |gene_alias=CHR11SYT | + | |gene_alias=CHR11SYT |
|gene_description=synaptotagmin like 2 | |gene_description=synaptotagmin like 2 | ||
|gene_id=54843 | |gene_id=54843 | ||
| Line 24: | Line 30: | ||
|species=human | |species=human | ||
|start=85726387 | |start=85726387 | ||
| + | |start_of_center_position=19210241 | ||
|strand=- | |strand=- | ||
|tata_box="-84(GTCCCTAAAAGA,-,0.00),71(CTTTTAATAGGC,+,0.00)" | |tata_box="-84(GTCCCTAAAAGA,-,0.00),71(CTTTTAATAGGC,+,0.00)" | ||
Revision as of 18:49, 10 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 19210241 |
|---|---|
| End of the center position in the TSS region: | 19210242 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BX647671 |
|---|---|
| Distance: | -27 |
| Num_trans: | 7 |
| All_trans: | BX647671:-27 ENST00000354566.7:-80 ENST00000389959.8:-80 uc058gdw.1:-80 uc009yvj.5:-80 AK127504:-80 BX648068:479 |
TATA-Box annotation
| Distance to TSS: | -7038 |
|---|---|
| Nearest PromoterID: | NM_206930 |
| Entrez ID: | 54843 |
| Nearest Unigene: | Hs.369520 |
| Nearest Refseq: | NM_032379 |
| Nearest Ensembl: | ENSG00000137501 |
| Gene Name: | synaptotagmin like 2 |
| Gene Alias: | CHR11SYT |
| Gene Description: | synaptotagmin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-84(GTCCCTAAAAGA,-,0.00),71(CTTTTAATAGGC,+,0.00)" |
