Difference between revisions of "TSS:Hg 12227.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000464796.5:-23 uc001cqz.2:-23 S53678:-23 S53686:-23 NM_003189:-138 NM_001290406:-138 NM_001290403:-138 NM_001290405:299 NM_001290404:299 S53691:3...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |TCL5= | ||
|all_trans=ENST00000464796.5:-23 uc001cqz.2:-23 S53678:-23 S53686:-23 NM_003189:-138 NM_001290406:-138 NM_001290403:-138 NM_001290405:299 NM_001290404:299 S53691:389 ENST00000371884.6:473 NM_001287347:473 uc001cqy.3:473 S53245:473 | |all_trans=ENST00000464796.5:-23 uc001cqz.2:-23 S53678:-23 S53686:-23 NM_003189:-138 NM_001290406:-138 NM_001290403:-138 NM_001290405:299 NM_001290404:299 S53691:389 ENST00000371884.6:473 NM_001287347:473 uc001cqy.3:473 S53245:473 | ||
| + | |bHLHa17= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=143 | |distance_to_tss=143 | ||
|end=47232197 | |end=47232197 | ||
| + | |end_of_center_position=47232193 | ||
|entrez_id=6886 | |entrez_id=6886 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=SCL | + | |gene_alias=SCL |
|gene_description="TAL bHLH transcription factor 1, erythroid differentiation factor" | |gene_description="TAL bHLH transcription factor 1, erythroid differentiation factor" | ||
|gene_id=6886 | |gene_id=6886 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=47232187 | |start=47232187 | ||
| + | |start_of_center_position=47232192 | ||
|strand=- | |strand=- | ||
| + | |tal-1= | ||
|tata_box="40(CTTTTTCTAGGG,+,0.00)" | |tata_box="40(CTTTTTCTAGGG,+,0.00)" | ||
|transcript_name=ENST00000464796.5 uc001cqz.2 S53678 S53686 | |transcript_name=ENST00000464796.5 uc001cqz.2 S53678 S53686 | ||
Revision as of 00:27, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 47232192 |
|---|---|
| End of the center position in the TSS region: | 47232193 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000464796.5 uc001cqz.2 S53678 S53686 |
|---|---|
| Distance: | -23 |
| Num_trans: | 14 |
| All_trans: | ENST00000464796.5:-23 uc001cqz.2:-23 S53678:-23 S53686:-23 NM_003189:-138 NM_001290406:-138 NM_001290403:-138 NM_001290405:299 NM_001290404:299 S53691:389 ENST00000371884.6:473 NM_001287347:473 uc001cqy.3:473 S53245:473 |
TATA-Box annotation
| Distance to TSS: | 143 |
|---|---|
| Nearest PromoterID: | NM_001290406 |
| Entrez ID: | 6886 |
| Nearest Unigene: | Hs.705618 |
| Nearest Refseq: | NM_003189 |
| Nearest Ensembl: | ENSG00000162367 |
| Gene Name: | T-cell acute lymphocytic leukemia 1 |
| Gene Alias: | SCL |
| Gene Description: | "TAL bHLH transcription factor 1, erythroid differentiation factor" |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "40(CTTTTTCTAGGG,+,0.00)" |
