Difference between revisions of "TSS:Hg 242698.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CYPH= | ||
| + | |HEL-S-69p= | ||
|all_trans=NM_001300981:-10 NM_021130:-10 BC137057:-10 BC137058:-10 BC005982:27 AK290851:27 ENST00000481437.5:28 ENST00000451562.5:28 ENST00000468812.5:28 uc064djm.1:28 uc064djn.1:28 uc003tlw.4:28 BC007104:28 BC013915:28 AK293003:28 AK130101:28 ENST00000489459.5:29 ENST00000355968.10:29 ENST00000620047.4:29 ENST00000479021.1:29 uc064djo.1:29 uc064djp.1:29 uc064djq.1:29 uc064djr.1:29 AK316564:29 AK026569:29 BC093076:29 AK297340:29 ENST00000415933.5:30 uc064djs.1:30 D28351:30 BC005320:30 BC018843:30 AK290085:30 BC106030:37 EU794650:37 BC073992:39 BC069050:43 BC003026:45 BC000689:51 Y00052:59 AB464007:70 DQ895865:71 DQ892625:71 CU674338:72 KJ891858:72 KJ905864:72 KJ897362:72 AB451438:73 AB451307:73 CR456707:73 | |all_trans=NM_001300981:-10 NM_021130:-10 BC137057:-10 BC137058:-10 BC005982:27 AK290851:27 ENST00000481437.5:28 ENST00000451562.5:28 ENST00000468812.5:28 uc064djm.1:28 uc064djn.1:28 uc003tlw.4:28 BC007104:28 BC013915:28 AK293003:28 AK130101:28 ENST00000489459.5:29 ENST00000355968.10:29 ENST00000620047.4:29 ENST00000479021.1:29 uc064djo.1:29 uc064djp.1:29 uc064djq.1:29 uc064djr.1:29 AK316564:29 AK026569:29 BC093076:29 AK297340:29 ENST00000415933.5:30 uc064djs.1:30 D28351:30 BC005320:30 BC018843:30 AK290085:30 BC106030:37 EU794650:37 BC073992:39 BC069050:43 BC003026:45 BC000689:51 Y00052:59 AB464007:70 DQ895865:71 DQ892625:71 CU674338:72 KJ891858:72 KJ905864:72 KJ897362:72 AB451438:73 AB451307:73 CR456707:73 | ||
|chr=chr7 | |chr=chr7 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=13 | |distance_to_tss=13 | ||
|end=44796652 | |end=44796652 | ||
| + | |end_of_center_position=143815309 | ||
|entrez_id=5478 | |entrez_id=5478 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=CYPA | + | |gene_alias=CYPA |
|gene_description=peptidylprolyl isomerase A | |gene_description=peptidylprolyl isomerase A | ||
|gene_id=5478 | |gene_id=5478 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=44796645 | |start=44796645 | ||
| + | |start_of_center_position=143815308 | ||
|strand=+ | |strand=+ | ||
|tata_box="-2(TGGTATAAAAGG,-,0.00)" | |tata_box="-2(TGGTATAAAAGG,-,0.00)" | ||
Revision as of 03:17, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 143815308 |
|---|---|
| End of the center position in the TSS region: | 143815309 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001300981 NM_021130 BC137057 BC137058 |
|---|---|
| Distance: | -10 |
| Num_trans: | 51 |
| All_trans: | NM_001300981:-10 NM_021130:-10 BC137057:-10 BC137058:-10 BC005982:27 AK290851:27 ENST00000481437.5:28 ENST00000451562.5:28 ENST00000468812.5:28 uc064djm.1:28 uc064djn.1:28 uc003tlw.4:28 BC007104:28 BC013915:28 AK293003:28 AK130101:28 ENST00000489459.5:29 ENST00000355968.10:29 ENST00000620047.4:29 ENST00000479021.1:29 uc064djo.1:29 uc064djp.1:29 uc064djq.1:29 uc064djr.1:29 AK316564:29 AK026569:29 BC093076:29 AK297340:29 ENST00000415933.5:30 uc064djs.1:30 D28351:30 BC005320:30 BC018843:30 AK290085:30 BC106030:37 EU794650:37 BC073992:39 BC069050:43 BC003026:45 BC000689:51 Y00052:59 AB464007:70 DQ895865:71 DQ892625:71 CU674338:72 KJ891858:72 KJ905864:72 KJ897362:72 AB451438:73 AB451307:73 CR456707:73 |
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001300981 |
| Entrez ID: | 5478 |
| Nearest Unigene: | Hs.356331 |
| Nearest Refseq: | NM_021130 |
| Nearest Ensembl: | ENSG00000196262 |
| Gene Name: | peptidylprolyl isomerase A |
| Gene Alias: | CYPA |
| Gene Description: | peptidylprolyl isomerase A |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-2(TGGTATAAAAGG,-,0.00)" |
