Difference between revisions of "TSS:Hg 100119.1"
From referenceTSS
| Line 6: | Line 6: | ||
|distance_to_tss=142899 | |distance_to_tss=142899 | ||
|end=16727896 | |end=16727896 | ||
| + | |end_of_center_position=16727890 | ||
|entrez_id=54796 | |entrez_id=54796 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| Line 24: | Line 25: | ||
|species=human | |species=human | ||
|start=16727882 | |start=16727882 | ||
| + | |start_of_center_position=16727889 | ||
|strand=- | |strand=- | ||
|tata_box="-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00)" | |tata_box="-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00)" | ||
Revision as of 05:09, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 16727889 |
|---|---|
| End of the center position in the TSS region: | 16727890 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AY438376 |
|---|---|
| Distance: | -15 |
| Num_trans: | 10 |
| All_trans: | AY438376:-15 ENST00000418777.5:-101 ENST00000468187.6:-101 uc064sgb.1:-101 uc064sgj.1:-101 ENST00000603713.5:-269 uc064sgf.1:-269 DQ884944:-269 ENST00000603313.5:-318 uc064sgi.1:-318 |
TATA-Box annotation
| Distance to TSS: | 142899 |
|---|---|
| Nearest PromoterID: | NM_017637 |
| Entrez ID: | 54796 |
| Nearest Unigene: | Hs.656581 |
| Nearest Refseq: | NM_017637 |
| Nearest Ensembl: | ENSG00000173068 |
| Gene Name: | basonuclin 2 |
| Gene Alias: | BSN2 |
| Gene Description: | basonuclin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.02 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(GACTTTAAGAGA,-,0.00),-33(ACTTTAAGAGAC,+,0.00)" |
