Difference between revisions of "TSS:Hg 13962.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK130392:-10 |chr=chr1 |cpg_percent=0.005 |distance=-10 |distance_to_tss=-10156 |end=114727057 |entrez_id=4893 |gc_percent=0.383085 |gene_alias=ALPS4|CM...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMNS= | ||
| + | |N-ras= | ||
| + | |NCMS= | ||
| + | |NRAS1= | ||
| + | |NS6= | ||
|all_trans=AK130392:-10 | |all_trans=AK130392:-10 | ||
|chr=chr1 | |chr=chr1 | ||
| Line 6: | Line 11: | ||
|distance_to_tss=-10156 | |distance_to_tss=-10156 | ||
|end=114727057 | |end=114727057 | ||
| + | |end_of_center_position=114727050 | ||
|entrez_id=4893 | |entrez_id=4893 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias=ALPS4 | + | |gene_alias=ALPS4 |
|gene_description=neuroblastoma RAS viral oncogene homolog | |gene_description=neuroblastoma RAS viral oncogene homolog | ||
|gene_id=7812 | |gene_id=7812 | ||
| Line 24: | Line 30: | ||
|species=human | |species=human | ||
|start=114727042 | |start=114727042 | ||
| + | |start_of_center_position=114727049 | ||
|strand=- | |strand=- | ||
|tata_box="14(GCTTTTCAAGCC,+,0.00)" | |tata_box="14(GCTTTTCAAGCC,+,0.00)" | ||
Revision as of 06:28, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 114727049 |
|---|---|
| End of the center position in the TSS region: | 114727050 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK130392 |
|---|---|
| Distance: | -10 |
| Num_trans: | 1 |
| All_trans: | AK130392:-10 |
TATA-Box annotation
| Distance to TSS: | -10156 |
|---|---|
| Nearest PromoterID: | NM_002524 |
| Entrez ID: | 4893 |
| Nearest Unigene: | Hs.486502 |
| Nearest Refseq: | NM_002524 |
| Nearest Ensembl: | ENSG00000213281 |
| Gene Name: | cold shock domain containing E1 |
| Gene Alias: | ALPS4 |
| Gene Description: | neuroblastoma RAS viral oncogene homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "14(GCTTTTCAAGCC,+,0.00)" |
