Difference between revisions of "TSS:Hg 243384.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000374517.5:-35 NM_003329:-35 NM_001244938:-35 uc004bep.3:-35 AK289508:43 D28376:51 BX647247:63 X77584:89 BC054866:97 BC003377:112 J04026:112 ENST...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |TRX= | ||
| + | |TRX1= | ||
|all_trans=ENST00000374517.5:-35 NM_003329:-35 NM_001244938:-35 uc004bep.3:-35 AK289508:43 D28376:51 BX647247:63 X77584:89 BC054866:97 BC003377:112 J04026:112 ENST00000374515.9:138 uc004beq.3:138 AF085844:157 AY004872:159 AF313911:159 AF276919:169 JQ313905:169 KJ897717:169 CR407665:169 AF065241:172 | |all_trans=ENST00000374517.5:-35 NM_003329:-35 NM_001244938:-35 uc004bep.3:-35 AK289508:43 D28376:51 BX647247:63 X77584:89 BC054866:97 BC003377:112 J04026:112 ENST00000374515.9:138 uc004beq.3:138 AF085844:157 AY004872:159 AF313911:159 AF276919:169 JQ313905:169 KJ897717:169 CR407665:169 AF065241:172 | ||
|chr=chr9 | |chr=chr9 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=36 | |distance_to_tss=36 | ||
|end=110256605 | |end=110256605 | ||
| + | |end_of_center_position=93125044 | ||
|entrez_id=7295 | |entrez_id=7295 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
| − | |gene_alias=TRDX | + | |gene_alias=TRDX |
|gene_description=thioredoxin | |gene_description=thioredoxin | ||
|gene_id=7295 | |gene_id=7295 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=110256603 | |start=110256603 | ||
| + | |start_of_center_position=93125043 | ||
|strand=- | |strand=- | ||
|tata_box="62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00)" | |tata_box="62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00)" | ||
Revision as of 09:27, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 93125043 |
|---|---|
| End of the center position in the TSS region: | 93125044 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000374517.5 NM_003329 NM_001244938 uc004bep.3 |
|---|---|
| Distance: | -35 |
| Num_trans: | 21 |
| All_trans: | ENST00000374517.5:-35 NM_003329:-35 NM_001244938:-35 uc004bep.3:-35 AK289508:43 D28376:51 BX647247:63 X77584:89 BC054866:97 BC003377:112 J04026:112 ENST00000374515.9:138 uc004beq.3:138 AF085844:157 AY004872:159 AF313911:159 AF276919:169 JQ313905:169 KJ897717:169 CR407665:169 AF065241:172 |
TATA-Box annotation
| Distance to TSS: | 36 |
|---|---|
| Nearest PromoterID: | NM_003329 |
| Entrez ID: | 7295 |
| Nearest Unigene: | Hs.435136 |
| Nearest Refseq: | NM_003329 |
| Nearest Ensembl: | ENSG00000136810 |
| Gene Name: | thioredoxin |
| Gene Alias: | TRDX |
| Gene Description: | thioredoxin |
| Gene Type: | protein-coding |
| CpG%: | 0.14 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "62(CAGTTTATAAAG,-,0.00),64(GTTTATAAAGGG,+,0.00),64(GTTTATAAAGGG,-,0.00)" |
