Difference between revisions of "TSS:Hg 101573.1"
From referenceTSS
| Line 12: | Line 12: | ||
|distance_to_tss=183 | |distance_to_tss=183 | ||
|end=95516796 | |end=95516796 | ||
| + | |end_of_center_position=95516783 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 30: | Line 31: | ||
|species=human | |species=human | ||
|start=95516768 | |start=95516768 | ||
| + | |start_of_center_position=95516782 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000551623.1 ENST00000551425.1 uc064unc.1 uc010mrw.2 AB239329 AB212827 AB212828 | |transcript_name=ENST00000551623.1 ENST00000551425.1 uc064unc.1 uc010mrw.2 AB239329 AB212827 AB212828 | ||
Revision as of 09:48, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 95516782 |
|---|---|
| End of the center position in the TSS region: | 95516783 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000551623.1 ENST00000551425.1 uc064unc.1 uc010mrw.2 AB239329 AB212827 AB212828 |
|---|---|
| Distance: | 111 |
| Num_trans: | 20 |
| All_trans: | ENST00000551623.1:111 ENST00000551425.1:111 uc064unc.1:111 uc010mrw.2:111 AB239329:111 AB212827:111 AB212828:111 ENST00000437951.5:-169 ENST00000375274.6:-169 NM_001083603:-169 NM_001083602:-169 uc010mrr.4:-169 uc004avm.5:-169 AB189436:-169 AB189437:-169 ENST00000430669.6:-261 ENST00000468211.6:-261 uc064umn.1:-261 uc004avo.3:-261 BC043542:-261 |
TATA-Box annotation
| Distance to TSS: | 183 |
|---|---|
| Nearest PromoterID: | NM_001083602 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
