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Difference between revisions of "TSS:Hg 101578.1"

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Line 12: Line 12:
 
|distance_to_tss=13
 
|distance_to_tss=13
 
|end=95516957
 
|end=95516957
 +
|end_of_center_position=95516953
 
|entrez_id=5727
 
|entrez_id=5727
 
|gc_percent=0.621891
 
|gc_percent=0.621891
|gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11
+
|gene_alias=BCNS
 
|gene_description=patched 1
 
|gene_description=patched 1
 
|gene_id=5727
 
|gene_id=5727
Line 30: Line 31:
 
|species=human
 
|species=human
 
|start=95516947
 
|start=95516947
 +
|start_of_center_position=95516952
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437
 
|transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437

Revision as of 09:49, 11 May 2019

Basic information about the TSS


TSS ID:hg_101578.1
Species:human
Chr:chr9
TSS Classification:yes
Start:95516947
End:95516957
Strand:-
TSS Score:1
Start of the center position in the TSS region:95516952
End of the center position in the TSS region:95516953



Gene and protein annotation


Transcript_name:ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437
Distance:-8
GeneID:5727
HGNC/MGI_ID:HGNC:9585
UniProt_ID:Q13635 Q59FG5
Gene_name:patched 1
Gene_symbol:PTCH1
Gene_synonyms:BCNS
Gene_source:HGNC:9585



Transcript annotation


Transcript_name:ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437
Distance:-8
Num_trans:20
All_trans:ENST00000437951.5:-8 ENST00000375274.6:-8 NM_001083603:-8 NM_001083602:-8 uc010mrr.4:-8 uc004avm.5:-8 AB189436:-8 AB189437:-8 ENST00000430669.6:-100 ENST00000468211.6:-100 uc064umn.1:-100 uc004avo.3:-100 BC043542:-100 ENST00000551623.1:290 ENST00000551425.1:290 uc064unc.1:290 uc010mrw.2:290 AB239329:290 AB212827:290 AB212828:290



TATA-Box annotation


Distance to TSS:13
Nearest PromoterID:NM_001083602
Entrez ID:5727
Nearest Unigene:Hs.494538
Nearest Refseq:NM_000264
Nearest Ensembl:ENSG00000185920
Gene Name:patched 1
Gene Alias:BCNS
Gene Description:patched 1
Gene Type:protein-coding
CpG%:0.07
GC%:0.621891
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):