Difference between revisions of "TSS:Hg 101579.1"
From referenceTSS
| Line 12: | Line 12: | ||
|distance_to_tss=-3 | |distance_to_tss=-3 | ||
|end=95516977 | |end=95516977 | ||
| + | |end_of_center_position=95516969 | ||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=BCNS | + | |gene_alias=BCNS |
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_id=5727 | |gene_id=5727 | ||
| Line 30: | Line 31: | ||
|species=human | |species=human | ||
|start=95516959 | |start=95516959 | ||
| + | |start_of_center_position=95516968 | ||
|strand=- | |strand=- | ||
|transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 | |transcript_name=ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 | ||
Revision as of 09:49, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 95516968 |
|---|---|
| End of the center position in the TSS region: | 95516969 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000437951.5 ENST00000375274.6 NM_001083603 NM_001083602 uc010mrr.4 uc004avm.5 AB189436 AB189437 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000437951.5:0 ENST00000375274.6:0 NM_001083603:0 NM_001083602:0 uc010mrr.4:0 uc004avm.5:0 AB189436:0 AB189437:0 ENST00000430669.6:-80 ENST00000468211.6:-80 uc064umn.1:-80 uc004avo.3:-80 BC043542:-80 ENST00000551623.1:302 ENST00000551425.1:302 uc064unc.1:302 uc010mrw.2:302 AB239329:302 AB212827:302 AB212828:302 |
TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001083603 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | patched 1 |
| Gene Alias: | BCNS |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
