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Difference between revisions of "TSS:Hg 102359.1"

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Line 9: Line 9:
 
|distance_to_tss=316
 
|distance_to_tss=316
 
|end=121499715
 
|end=121499715
 +
|end_of_center_position=121499711
 
|entrez_id=2681
 
|entrez_id=2681
 
|gc_percent=0.800995
 
|gc_percent=0.800995
|gene_alias=GGTA|GGTA1|GLYT2|a1/3GTP
+
|gene_alias=GGTA
 
|gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene"
 
|gene_description="glycoprotein, alpha-galactosyltransferase 1 pseudogene"
 
|gene_id=2681
 
|gene_id=2681
Line 27: Line 28:
 
|species=human
 
|species=human
 
|start=121499706
 
|start=121499706
 +
|start_of_center_position=121499710
 
|strand=-
 
|strand=-
 
|transcript_name=ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122
 
|transcript_name=ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122

Revision as of 12:32, 11 May 2019

Basic information about the TSS


TSS ID:hg_102359.1
Species:human
Chr:chr9
TSS Classification:yes
Start:121499706
End:121499715
Strand:-
TSS Score:1
Start of the center position in the TSS region:121499710
End of the center position in the TSS region:121499711



Gene and protein annotation


Transcript_name:ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122
Distance:-42
GeneID:2681
HGNC/MGI_ID:HGNC:4253 HGNC:4254
UniProt_ID:
Gene_name:"glycoprotein, alpha-galactosyltransferase 1 pseudogene; glycoprotein, alpha-galactosyltransferase 2, pseudogene"
Gene_symbol:GGTA1P GGTA2P
Gene_synonyms:HGT2
Gene_source:HGNC:4253 HGNC:4254



Transcript annotation


Transcript_name:ENST00000481534.5 ENST00000495328.5 AF378121 AF378123 AF378122
Distance:-42
Num_trans:10
All_trans:ENST00000481534.5:-42 ENST00000495328.5:-42 AF378121:-42 AF378123:-42 AF378122:-42 ENST00000373793.3:-101 BC045756:-150 ENST00000481799.5:-312 NR_003191:-312 NR_045211:-312



TATA-Box annotation


Distance to TSS:316
Nearest PromoterID:NR_045211
Entrez ID:2681
Nearest Unigene:Hs.97469
Nearest Refseq:NR_003191
Nearest Ensembl:ENSG00000204136
Gene Name:"glycoprotein, alpha-galactosyltransferase 1 pseudogene; glycoprotein, alpha-galactosyltransferase 2, pseudogene"
Gene Alias:GGTA
Gene Description:"glycoprotein, alpha-galactosyltransferase 1 pseudogene"
Gene Type:pseudo
CpG%:0.15
GC%:0.800995
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):