Difference between revisions of "TSS:Hg 102660.1"
From referenceTSS
| Line 9: | Line 9: | ||
|distance_to_tss=248 | |distance_to_tss=248 | ||
|end=128127946 | |end=128127946 | ||
| + | |end_of_center_position=128127941 | ||
|entrez_id=80142 | |entrez_id=80142 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=C9orf15 | + | |gene_alias=C9orf15 |
|gene_description=prostaglandin E synthase 2 | |gene_description=prostaglandin E synthase 2 | ||
|gene_id=80142 | |gene_id=80142 | ||
| Line 28: | Line 29: | ||
|species=human | |species=human | ||
|start=128127934 | |start=128127934 | ||
| + | |start_of_center_position=128127940 | ||
|strand=- | |strand=- | ||
|tata_box="-89(CCCTTTAGGCGG,+,0.00)" | |tata_box="-89(CCCTTTAGGCGG,+,0.00)" | ||
Revision as of 13:31, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 128127940 |
|---|---|
| End of the center position in the TSS region: | 128127941 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC011613 |
|---|---|
| Distance: | 38 |
| Num_trans: | 32 |
| All_trans: | BC011613:38 ENST00000485237.1:-168 uc064wba.1:-168 ENST00000487063.5:-200 uc064wat.1:-200 AK024100:206 ENST00000449878.1:211 uc064wav.1:211 AK223520:211 KJ905547:217 DQ891904:217 DQ895090:217 AB463194:217 AM392565:217 ENST00000496594.5:218 uc064waq.1:218 BC009456:220 ENST00000485510.5:224 uc064waz.1:224 ENST00000483625.5:226 uc064wax.1:226 BC009397:238 ENST00000617202.4:-242 NM_001256335:-242 uc031tff.2:-242 ENST00000474124.5:260 uc064wau.1:260 ENST00000476748.5:-449 uc064waw.1:-449 AK301618:-449 ENST00000497109.5:-472 uc064way.1:-472 |
TATA-Box annotation
| Distance to TSS: | 248 |
|---|---|
| Nearest PromoterID: | NM_001256335 |
| Entrez ID: | 80142 |
| Nearest Unigene: | Hs.495219 |
| Nearest Refseq: | NM_025072 |
| Nearest Ensembl: | ENSG00000148334 |
| Gene Name: | prostaglandin E synthase 2 |
| Gene Alias: | C9orf15 |
| Gene Description: | prostaglandin E synthase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-89(CCCTTTAGGCGG,+,0.00)" |
