Difference between revisions of "TSS:Mm 100675.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc056yjd.1:0 BC007129:0 AK161560:0 AK044582:0 AK042206:0 ENSMUST00000101638.3:-15 ENSMUST00000125832.7:-15 AB008117:-15 U88618:26 AB005131:26 ENSMUST000...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=100 | |distance_to_tss=100 | ||
|end=3409159 | |end=3409159 | ||
| + | |end_of_center_position=3409138 | ||
|entrez_id=16886 | |entrez_id=16886 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=Limk-2 | + | |gene_alias=Limk-2 |
|gene_description=LIM motif-containing protein kinase 2 | |gene_description=LIM motif-containing protein kinase 2 | ||
|gene_id=16886 | |gene_id=16886 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=3409116 | |start=3409116 | ||
| + | |start_of_center_position=3409137 | ||
|strand=- | |strand=- | ||
|transcript_name=uc056yjd.1 BC007129 AK161560 AK044582 AK042206 | |transcript_name=uc056yjd.1 BC007129 AK161560 AK044582 AK042206 | ||
| Line 30: | Line 32: | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
| + | |whe= | ||
}} | }} | ||
Revision as of 20:19, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 3409137 |
|---|---|
| End of the center position in the TSS region: | 3409138 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | uc056yjd.1 BC007129 AK161560 AK044582 AK042206 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | uc056yjd.1:0 BC007129:0 AK161560:0 AK044582:0 AK042206:0 ENSMUST00000101638.3:-15 ENSMUST00000125832.7:-15 AB008117:-15 U88618:26 AB005131:26 ENSMUST00000145223.1:-30 NM_010718:-79 uc007hsu.2:-79 |
TATA-Box annotation
| Distance to TSS: | 100 |
|---|---|
| Nearest PromoterID: | NM_010718 |
| Entrez ID: | 16886 |
| Nearest Unigene: | Mm.124176 |
| Nearest Refseq: | NM_010718 |
| Nearest Ensembl: | ENSMUSG00000020451 |
| Gene Name: | LIM motif-containing protein kinase 2 |
| Gene Alias: | Limk-2 |
| Gene Description: | LIM motif-containing protein kinase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
