Difference between revisions of "TSS:Mm 100729.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AF090686:6 AK196753:13 AK197212:13 BC003720:88 ENSMUST00000109992.7:-190 ENSMUST00000109988.1:-205 ENSMUST00000109990.7:-361 NM_001130459:-362 uc007htx....") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Tcn-2= | ||
|all_trans=AF090686:6 AK196753:13 AK197212:13 BC003720:88 ENSMUST00000109992.7:-190 ENSMUST00000109988.1:-205 ENSMUST00000109990.7:-361 NM_001130459:-362 uc007htx.2:-362 AK143761:-362 ENSMUST00000020710.10:-396 AK161618:-411 AK147176:-415 AK133707:-443 ENSMUST00000109989.9:-445 NM_015749:-445 uc007hty.2:-445 AK170401:-466 ENSMUST00000109991.7:-479 NM_001130458:-479 uc007htz.2:-479 | |all_trans=AF090686:6 AK196753:13 AK197212:13 BC003720:88 ENSMUST00000109992.7:-190 ENSMUST00000109988.1:-205 ENSMUST00000109990.7:-361 NM_001130459:-362 uc007htx.2:-362 AK143761:-362 ENSMUST00000020710.10:-396 AK161618:-411 AK147176:-415 AK133707:-443 ENSMUST00000109989.9:-445 NM_015749:-445 uc007hty.2:-445 AK170401:-466 ENSMUST00000109991.7:-479 NM_001130458:-479 uc007htz.2:-479 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=367 | |distance_to_tss=367 | ||
|end=3931599 | |end=3931599 | ||
| + | |end_of_center_position=3931594 | ||
|entrez_id=21452 | |entrez_id=21452 | ||
|gc_percent=0.507463 | |gc_percent=0.507463 | ||
| − | |gene_alias=AW208754 | + | |gene_alias=AW208754 |
|gene_description=transcobalamin 2 | |gene_description=transcobalamin 2 | ||
|gene_id=21452 | |gene_id=21452 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=3931588 | |start=3931588 | ||
| + | |start_of_center_position=3931593 | ||
|strand=- | |strand=- | ||
|transcript_name=AF090686 | |transcript_name=AF090686 | ||
Revision as of 20:26, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 3931593 |
|---|---|
| End of the center position in the TSS region: | 3931594 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF090686 |
|---|---|
| Distance: | 6 |
| Num_trans: | 21 |
| All_trans: | AF090686:6 AK196753:13 AK197212:13 BC003720:88 ENSMUST00000109992.7:-190 ENSMUST00000109988.1:-205 ENSMUST00000109990.7:-361 NM_001130459:-362 uc007htx.2:-362 AK143761:-362 ENSMUST00000020710.10:-396 AK161618:-411 AK147176:-415 AK133707:-443 ENSMUST00000109989.9:-445 NM_015749:-445 uc007hty.2:-445 AK170401:-466 ENSMUST00000109991.7:-479 NM_001130458:-479 uc007htz.2:-479 |
TATA-Box annotation
| Distance to TSS: | 367 |
|---|---|
| Nearest PromoterID: | NM_001130459 |
| Entrez ID: | 21452 |
| Nearest Unigene: | Mm.20948 |
| Nearest Refseq: | NM_015749 |
| Nearest Ensembl: | ENSMUSG00000020432 |
| Gene Name: | transcobalamin 2 |
| Gene Alias: | AW208754 |
| Gene Description: | transcobalamin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.507463 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
