Difference between revisions of "TSS:Mm 100730.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459:-145 uc007htx.2:-145 AK143761:-145 ENSMUST00000020710.10:-179 AK161...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Tcn-2= | ||
|all_trans=ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459:-145 uc007htx.2:-145 AK143761:-145 ENSMUST00000020710.10:-179 AK161618:-194 AK147176:-198 AF090686:209 AK196753:216 AK197212:216 AK133707:-226 ENSMUST00000109989.9:-228 NM_015749:-228 uc007hty.2:-228 AK170401:-249 ENSMUST00000109991.7:-262 NM_001130458:-262 uc007htz.2:-262 BC003720:291 ENSMUST00000109993.8:-343 | |all_trans=ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459:-145 uc007htx.2:-145 AK143761:-145 ENSMUST00000020710.10:-179 AK161618:-194 AK147176:-198 AF090686:209 AK196753:216 AK197212:216 AK133707:-226 ENSMUST00000109989.9:-228 NM_015749:-228 uc007hty.2:-228 AK170401:-249 ENSMUST00000109991.7:-262 NM_001130458:-262 uc007htz.2:-262 BC003720:291 ENSMUST00000109993.8:-343 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=157 | |distance_to_tss=157 | ||
|end=3931816 | |end=3931816 | ||
| + | |end_of_center_position=3931804 | ||
|entrez_id=21452 | |entrez_id=21452 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
| − | |gene_alias=AW208754 | + | |gene_alias=AW208754 |
|gene_description=transcobalamin 2 | |gene_description=transcobalamin 2 | ||
|gene_id=21452 | |gene_id=21452 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=3931791 | |start=3931791 | ||
| + | |start_of_center_position=3931803 | ||
|strand=- | |strand=- | ||
|tata_box="51(GGGTCTTTAAAG,-,0.00),52(GGTCTTTAAAGC,-,0.00),53(GTCTTTAAAGCG,+,0.00)" | |tata_box="51(GGGTCTTTAAAG,-,0.00),52(GGTCTTTAAAGC,-,0.00),53(GTCTTTAAAGCG,+,0.00)" | ||
Revision as of 20:26, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 3931803 |
|---|---|
| End of the center position in the TSS region: | 3931804 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000109988.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000109988.1:0 ENSMUST00000109992.7:3 ENSMUST00000109990.7:-144 NM_001130459:-145 uc007htx.2:-145 AK143761:-145 ENSMUST00000020710.10:-179 AK161618:-194 AK147176:-198 AF090686:209 AK196753:216 AK197212:216 AK133707:-226 ENSMUST00000109989.9:-228 NM_015749:-228 uc007hty.2:-228 AK170401:-249 ENSMUST00000109991.7:-262 NM_001130458:-262 uc007htz.2:-262 BC003720:291 ENSMUST00000109993.8:-343 |
TATA-Box annotation
| Distance to TSS: | 157 |
|---|---|
| Nearest PromoterID: | NM_001130459 |
| Entrez ID: | 21452 |
| Nearest Unigene: | Mm.20948 |
| Nearest Refseq: | NM_015749 |
| Nearest Ensembl: | ENSMUSG00000020432 |
| Gene Name: | transcobalamin 2 |
| Gene Alias: | AW208754 |
| Gene Description: | transcobalamin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "51(GGGTCTTTAAAG,-,0.00),52(GGTCTTTAAAGC,-,0.00),53(GTCTTTAAAGCG,+,0.00)" |
