Difference between revisions of "TSS:Hg 23303.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |ITRAF= | ||
| + | |TRAF2= | ||
|all_trans=ENST00000392749.6:0 ENST00000440506.5:0 uc002ubs.4:0 uc061oxr.1:0 ENST00000461338.5:41 ENST00000429217.5:41 uc061oxs.1:41 uc061oxt.1:41 ENST00000406287.5:46 ENST00000402568.5:46 uc061oxu.1:46 uc061oxv.1:46 ENST00000457887.5:103 uc061oxw.1:103 ENST00000477952.1:124 uc061oxx.1:124 ENST00000441987.5:125 ENST00000432692.6:125 NM_001199135:125 uc061oxy.1:125 uc061oxz.1:125 AK313096:125 ENST00000494976.1:129 uc061oya.1:129 BC067779:133 ENST00000405852.5:134 uc061oyb.1:134 ENST00000483622.1:154 uc061oyc.1:154 ENST00000456358.5:423 uc061oyd.1:423 | |all_trans=ENST00000392749.6:0 ENST00000440506.5:0 uc002ubs.4:0 uc061oxr.1:0 ENST00000461338.5:41 ENST00000429217.5:41 uc061oxs.1:41 uc061oxt.1:41 ENST00000406287.5:46 ENST00000402568.5:46 uc061oxu.1:46 uc061oxv.1:46 ENST00000457887.5:103 uc061oxw.1:103 ENST00000477952.1:124 uc061oxx.1:124 ENST00000441987.5:125 ENST00000432692.6:125 NM_001199135:125 uc061oxy.1:125 uc061oxz.1:125 AK313096:125 ENST00000494976.1:129 uc061oya.1:129 BC067779:133 ENST00000405852.5:134 uc061oyb.1:134 ENST00000483622.1:154 uc061oyc.1:154 ENST00000456358.5:423 uc061oyd.1:423 | ||
|chr=chr2 | |chr=chr2 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-130 | |distance_to_tss=-130 | ||
|end=161160303 | |end=161160303 | ||
| + | |end_of_center_position=161160299 | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.666667 | |gc_percent=0.666667 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=161160293 | |start=161160293 | ||
| + | |start_of_center_position=161160298 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000392749.6 ENST00000440506.5 uc002ubs.4 uc061oxr.1 | |transcript_name=ENST00000392749.6 ENST00000440506.5 uc002ubs.4 uc061oxr.1 | ||
Revision as of 20:41, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161160298 |
|---|---|
| End of the center position in the TSS region: | 161160299 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000392749.6 ENST00000440506.5 uc002ubs.4 uc061oxr.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000392749.6:0 ENST00000440506.5:0 uc002ubs.4:0 uc061oxr.1:0 ENST00000461338.5:41 ENST00000429217.5:41 uc061oxs.1:41 uc061oxt.1:41 ENST00000406287.5:46 ENST00000402568.5:46 uc061oxu.1:46 uc061oxv.1:46 ENST00000457887.5:103 uc061oxw.1:103 ENST00000477952.1:124 uc061oxx.1:124 ENST00000441987.5:125 ENST00000432692.6:125 NM_001199135:125 uc061oxy.1:125 uc061oxz.1:125 AK313096:125 ENST00000494976.1:129 uc061oya.1:129 BC067779:133 ENST00000405852.5:134 uc061oyb.1:134 ENST00000483622.1:154 uc061oyc.1:154 ENST00000456358.5:423 uc061oyd.1:423 |
TATA-Box annotation
| Distance to TSS: | -130 |
|---|---|
| Nearest PromoterID: | NM_001199135 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.666667 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
