Difference between revisions of "TSS:Hg 23305.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |ITRAF= | ||
| + | |TRAF2= | ||
|all_trans=ENST00000457887.5:0 ENST00000477952.1:0 ENST00000441987.5:0 ENST00000432692.6:0 ENST00000494976.1:0 ENST00000405852.5:0 NM_001199135:0 uc061oxw.1:0 uc061oxx.1:0 uc061oxy.1:0 uc061oxz.1:0 uc061oya.1:0 uc061oyb.1:0 AK313096:0 BC067779:0 ENST00000483622.1:14 uc061oyc.1:14 ENST00000406287.5:-57 ENST00000402568.5:-57 uc061oxu.1:-57 uc061oxv.1:-57 ENST00000461338.5:-62 ENST00000429217.5:-62 uc061oxs.1:-62 uc061oxt.1:-62 ENST00000440506.5:-107 uc061oxr.1:-107 ENST00000392749.6:-109 uc002ubs.4:-109 ENST00000456358.5:283 uc061oyd.1:283 | |all_trans=ENST00000457887.5:0 ENST00000477952.1:0 ENST00000441987.5:0 ENST00000432692.6:0 ENST00000494976.1:0 ENST00000405852.5:0 NM_001199135:0 uc061oxw.1:0 uc061oxx.1:0 uc061oxy.1:0 uc061oxz.1:0 uc061oya.1:0 uc061oyb.1:0 AK313096:0 BC067779:0 ENST00000483622.1:14 uc061oyc.1:14 ENST00000406287.5:-57 ENST00000402568.5:-57 uc061oxu.1:-57 uc061oxv.1:-57 ENST00000461338.5:-62 ENST00000429217.5:-62 uc061oxs.1:-62 uc061oxt.1:-62 ENST00000440506.5:-107 uc061oxr.1:-107 ENST00000392749.6:-109 uc002ubs.4:-109 ENST00000456358.5:283 uc061oyd.1:283 | ||
|chr=chr2 | |chr=chr2 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=-4 | |distance_to_tss=-4 | ||
|end=161160443 | |end=161160443 | ||
| + | |end_of_center_position=161160425 | ||
|entrez_id=10010 | |entrez_id=10010 | ||
|gc_percent=0.58209 | |gc_percent=0.58209 | ||
| − | |gene_alias=I-TRAF | + | |gene_alias=I-TRAF |
|gene_description=TRAF family member associated NFKB activator | |gene_description=TRAF family member associated NFKB activator | ||
|gene_id=10010 | |gene_id=10010 | ||
| Line 24: | Line 27: | ||
|species=human | |species=human | ||
|start=161160405 | |start=161160405 | ||
| + | |start_of_center_position=161160424 | ||
|strand=+ | |strand=+ | ||
|transcript_name=ENST00000457887.5 ENST00000477952.1 ENST00000441987.5 ENST00000432692.6 ENST00000494976.1 ENST00000405852.5 NM_001199135 uc061oxw.1 uc061oxx.1 uc061oxy.1 uc061oxz.1 uc061oya.1 uc061oyb.1 AK313096 BC067779 | |transcript_name=ENST00000457887.5 ENST00000477952.1 ENST00000441987.5 ENST00000432692.6 ENST00000494976.1 ENST00000405852.5 NM_001199135 uc061oxw.1 uc061oxx.1 uc061oxy.1 uc061oxz.1 uc061oya.1 uc061oyb.1 AK313096 BC067779 | ||
Revision as of 20:41, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 161160424 |
|---|---|
| End of the center position in the TSS region: | 161160425 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000457887.5 ENST00000477952.1 ENST00000441987.5 ENST00000432692.6 ENST00000494976.1 ENST00000405852.5 NM_001199135 uc061oxw.1 uc061oxx.1 uc061oxy.1 uc061oxz.1 uc061oya.1 uc061oyb.1 AK313096 BC067779 |
|---|---|
| Distance: | 0 |
| Num_trans: | 31 |
| All_trans: | ENST00000457887.5:0 ENST00000477952.1:0 ENST00000441987.5:0 ENST00000432692.6:0 ENST00000494976.1:0 ENST00000405852.5:0 NM_001199135:0 uc061oxw.1:0 uc061oxx.1:0 uc061oxy.1:0 uc061oxz.1:0 uc061oya.1:0 uc061oyb.1:0 AK313096:0 BC067779:0 ENST00000483622.1:14 uc061oyc.1:14 ENST00000406287.5:-57 ENST00000402568.5:-57 uc061oxu.1:-57 uc061oxv.1:-57 ENST00000461338.5:-62 ENST00000429217.5:-62 uc061oxs.1:-62 uc061oxt.1:-62 ENST00000440506.5:-107 uc061oxr.1:-107 ENST00000392749.6:-109 uc002ubs.4:-109 ENST00000456358.5:283 uc061oyd.1:283 |
TATA-Box annotation
| Distance to TSS: | -4 |
|---|---|
| Nearest PromoterID: | NM_001199135 |
| Entrez ID: | 10010 |
| Nearest Unigene: | Hs.132257 |
| Nearest Refseq: | NM_004180 |
| Nearest Ensembl: | ENSG00000136560 |
| Gene Name: | TRAF family member associated NFKB activator |
| Gene Alias: | I-TRAF |
| Gene Description: | TRAF family member associated NFKB activator |
| Gene Type: | protein-coding |
| CpG%: | 0.06 |
| GC%: | 0.58209 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
