Difference between revisions of "TSS:Mm 100806.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000122886.7:0 ENSMUST00000037146.9:0 ENSMUST00000056649.12:0 ENSMUST00000109895.1:0 ENSMUST00000152257.1:0 ENSMUST00000151936.1:0 NM_030228:0 N...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |D0Jmb1= | ||
| + | |Gar22= | ||
| + | |TU-71.1= | ||
|all_trans=ENSMUST00000122886.7:0 ENSMUST00000037146.9:0 ENSMUST00000056649.12:0 ENSMUST00000109895.1:0 ENSMUST00000152257.1:0 ENSMUST00000151936.1:0 NM_030228:0 NM_001190406:0 NM_144560:0 NM_001190408:0 uc007hvq.2:0 uc007hvr.2:0 uc007hvu.2:0 uc007hvv.2:0 AK082864:0 AK019661:0 BC031785:0 AK052229:0 uc007hvt.2:183 ENSMUST00000156196.1:426 AF508323:426 AF508324:426 | |all_trans=ENSMUST00000122886.7:0 ENSMUST00000037146.9:0 ENSMUST00000056649.12:0 ENSMUST00000109895.1:0 ENSMUST00000152257.1:0 ENSMUST00000151936.1:0 NM_030228:0 NM_001190406:0 NM_144560:0 NM_001190408:0 uc007hvq.2:0 uc007hvr.2:0 uc007hvu.2:0 uc007hvv.2:0 AK082864:0 AK019661:0 BC031785:0 AK052229:0 uc007hvt.2:183 ENSMUST00000156196.1:426 AF508323:426 AF508324:426 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 9: | ||
|distance_to_tss=24 | |distance_to_tss=24 | ||
|end=5065329 | |end=5065329 | ||
| + | |end_of_center_position=5065303 | ||
|entrez_id=78926 | |entrez_id=78926 | ||
|gc_percent=0.756219 | |gc_percent=0.756219 | ||
| − | |gene_alias=4930500E24Rik | + | |gene_alias=4930500E24Rik |
|gene_description=growth arrest-specific 2 like 1 | |gene_description=growth arrest-specific 2 like 1 | ||
|gene_id=78926 | |gene_id=78926 | ||
| Line 24: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=5065276 | |start=5065276 | ||
| + | |start_of_center_position=5065302 | ||
|strand=- | |strand=- | ||
|tata_box="-81(GCCCCTTTAAGA,-,0.00),-79(CCCTTTAAGAGC,+,0.00),-79(CCCTTTAAGAGC,-,0.00),-78(CCTTTAAGAGCG,+,0.00)" | |tata_box="-81(GCCCCTTTAAGA,-,0.00),-79(CCCTTTAAGAGC,+,0.00),-79(CCCTTTAAGAGC,-,0.00),-78(CCTTTAAGAGCG,+,0.00)" | ||
Revision as of 20:42, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 5065302 |
|---|---|
| End of the center position in the TSS region: | 5065303 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000122886.7 ENSMUST00000037146.9 ENSMUST00000056649.12 ENSMUST00000109895.1 ENSMUST00000152257.1 ENSMUST00000151936.1 NM_030228 NM_001190406 NM_144560 NM_001190408 uc007hvq.2 uc007hvr.2 uc007hvu.2 uc007hvv.2 AK082864 AK019661 BC031785 AK052229 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000122886.7:0 ENSMUST00000037146.9:0 ENSMUST00000056649.12:0 ENSMUST00000109895.1:0 ENSMUST00000152257.1:0 ENSMUST00000151936.1:0 NM_030228:0 NM_001190406:0 NM_144560:0 NM_001190408:0 uc007hvq.2:0 uc007hvr.2:0 uc007hvu.2:0 uc007hvv.2:0 AK082864:0 AK019661:0 BC031785:0 AK052229:0 uc007hvt.2:183 ENSMUST00000156196.1:426 AF508323:426 AF508324:426 |
TATA-Box annotation
| Distance to TSS: | 24 |
|---|---|
| Nearest PromoterID: | NM_144560 |
| Entrez ID: | 78926 |
| Nearest Unigene: | Mm.44591 |
| Nearest Refseq: | NM_030228 |
| Nearest Ensembl: | ENSMUSG00000034201 |
| Gene Name: | growth arrest-specific 2 like 1 |
| Gene Alias: | 4930500E24Rik |
| Gene Description: | growth arrest-specific 2 like 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.756219 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-81(GCCCCTTTAAGA,-,0.00),-79(CCCTTTAAGAGC,+,0.00),-79(CCCTTTAAGAGC,-,0.00),-78(CCTTTAAGAGCG,+,0.00)" |
