Difference between revisions of "TSS:Hg 196294.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000476625.5:0 ENST00000477561.5:0 NM_006044:0 uc064zam.1:0 uc004dk...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |HD6= | ||
| + | |JM21= | ||
| + | |PPP1R90= | ||
|all_trans=ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000476625.5:0 ENST00000477561.5:0 NM_006044:0 uc064zam.1:0 uc004dkt.2:0 uc010nig.2:0 uc064zan.1:0 uc064zao.1:0 uc064zap.1:0 AL137696:0 BC005872:0 AK024083:0 AJ011972:0 AB020708:0 BC069243:0 ENST00000334136.9:-15 uc004dks.2:-15 ENST00000483656.5:-19 uc064zal.1:-19 AK295884:44 ENST00000376610.6:-61 uc064zak.1:-61 ENST00000481929.5:65 uc064zaq.1:65 ENST00000441703.5:66 uc064zar.1:66 BC011498:69 ENST00000426196.5:71 uc064zas.1:71 AK095124:72 ENST00000489352.5:86 uc064zat.1:86 AK302926:-130 ENST00000469223.5:-217 uc064zaj.1:-217 ENST00000376643.6:-310 uc064zai.1:-310 ENST00000443563.5:394 uc064zau.1:394 ENST00000440653.1:429 uc064zav.1:429 | |all_trans=ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000476625.5:0 ENST00000477561.5:0 NM_006044:0 uc064zam.1:0 uc004dkt.2:0 uc010nig.2:0 uc064zan.1:0 uc064zao.1:0 uc064zap.1:0 AL137696:0 BC005872:0 AK024083:0 AJ011972:0 AB020708:0 BC069243:0 ENST00000334136.9:-15 uc004dks.2:-15 ENST00000483656.5:-19 uc064zal.1:-19 AK295884:44 ENST00000376610.6:-61 uc064zak.1:-61 ENST00000481929.5:65 uc064zaq.1:65 ENST00000441703.5:66 uc064zar.1:66 BC011498:69 ENST00000426196.5:71 uc064zas.1:71 AK095124:72 ENST00000489352.5:86 uc064zat.1:86 AK302926:-130 ENST00000469223.5:-217 uc064zaj.1:-217 ENST00000376643.6:-310 uc064zai.1:-310 ENST00000443563.5:394 uc064zau.1:394 ENST00000440653.1:429 uc064zav.1:429 | ||
|chr=chrX | |chr=chrX | ||
| Line 6: | Line 9: | ||
|distance_to_tss=49 | |distance_to_tss=49 | ||
|end=48802121 | |end=48802121 | ||
| + | |end_of_center_position=48802066 | ||
|entrez_id=10013 | |entrez_id=10013 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=CPBHM | + | |gene_alias=CPBHM |
|gene_description=histone deacetylase 6 | |gene_description=histone deacetylase 6 | ||
|gene_id=10013 | |gene_id=10013 | ||
| Line 24: | Line 28: | ||
|species=human | |species=human | ||
|start=48802009 | |start=48802009 | ||
| + | |start_of_center_position=48802065 | ||
|strand=+ | |strand=+ | ||
|tata_box="88(GGCCCGATAAGG,-,0.00)" | |tata_box="88(GGCCCGATAAGG,-,0.00)" | ||
Revision as of 20:47, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48802065 |
|---|---|
| End of the center position in the TSS region: | 48802066 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000476625.5 ENST00000477561.5 NM_006044 uc064zam.1 uc004dkt.2 uc010nig.2 uc064zan.1 uc064zao.1 uc064zap.1 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243 |
|---|---|
| Distance: | 0 |
| Num_trans: | 45 |
| All_trans: | ENST00000462730.5:0 ENST00000376619.6:0 ENST00000477528.5:0 ENST00000465269.5:0 ENST00000476625.5:0 ENST00000477561.5:0 NM_006044:0 uc064zam.1:0 uc004dkt.2:0 uc010nig.2:0 uc064zan.1:0 uc064zao.1:0 uc064zap.1:0 AL137696:0 BC005872:0 AK024083:0 AJ011972:0 AB020708:0 BC069243:0 ENST00000334136.9:-15 uc004dks.2:-15 ENST00000483656.5:-19 uc064zal.1:-19 AK295884:44 ENST00000376610.6:-61 uc064zak.1:-61 ENST00000481929.5:65 uc064zaq.1:65 ENST00000441703.5:66 uc064zar.1:66 BC011498:69 ENST00000426196.5:71 uc064zas.1:71 AK095124:72 ENST00000489352.5:86 uc064zat.1:86 AK302926:-130 ENST00000469223.5:-217 uc064zaj.1:-217 ENST00000376643.6:-310 uc064zai.1:-310 ENST00000443563.5:394 uc064zau.1:394 ENST00000440653.1:429 uc064zav.1:429 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NR_135593 |
| Entrez ID: | 10013 |
| Nearest Unigene: | Hs.6764 |
| Nearest Refseq: | NM_006044 |
| Nearest Ensembl: | ENSG00000094631 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | CPBHM |
| Gene Description: | histone deacetylase 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "88(GGCCCGATAAGG,-,0.00)" |
