Difference between revisions of "TSS:Mm 100896.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000123391.7:-225 ENSMUST00000109813.8:374 ENSMUST00000090443.9:374 NM_007595:374 NM_001174054:374 NM_001174053:374 uc007hxs.2:374 uc007hxr.2:37...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-381 | |distance_to_tss=-381 | ||
|end=6066137 | |end=6066137 | ||
| + | |end_of_center_position=6066130 | ||
|entrez_id=12323 | |entrez_id=12323 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=6066121 | |start=6066121 | ||
| + | |start_of_center_position=6066129 | ||
|strand=- | |strand=- | ||
|tata_box="-27(GCCTTTAGGGGA,+,0.00)" | |tata_box="-27(GCCTTTAGGGGA,+,0.00)" | ||
Revision as of 20:54, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 6066129 |
|---|---|
| End of the center position in the TSS region: | 6066130 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000123391.7 |
|---|---|
| Distance: | -225 |
| Num_trans: | 13 |
| All_trans: | ENSMUST00000123391.7:-225 ENSMUST00000109813.8:374 ENSMUST00000090443.9:374 NM_007595:374 NM_001174054:374 NM_001174053:374 uc007hxs.2:374 uc007hxr.2:374 uc007hxt.2:374 AK046454:374 ENSMUST00000002817.11:380 ENSMUST00000129098.1:464 AK048845:464 |
TATA-Box annotation
| Distance to TSS: | -381 |
|---|---|
| Nearest PromoterID: | NM_007595 |
| Entrez ID: | 12323 |
| Nearest Unigene: | Mm.439733 |
| Nearest Refseq: | NM_007595 |
| Nearest Ensembl: | ENSMUSG00000057897 |
| Gene Name: | "calcium/calmodulin-dependent protein kinase II, beta" |
| Gene Alias: | CaMKII |
| Gene Description: | "calcium/calmodulin-dependent protein kinase II, beta" |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-27(GCCTTTAGGGGA,+,0.00)" |
