Difference between revisions of "TSS:Mm 101154.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777.1:0 uc011xru.1:0 BC037766:0 AK013290:0 AK165613:0 AK141825:0 ENS...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |4930500E12Rik= | ||
| + | |Fabl= | ||
|all_trans=ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777.1:0 uc011xru.1:0 BC037766:0 AK013290:0 AK165613:0 AK141825:0 ENSMUST00000139271.1:2 BC054406:41 ENSMUST00000123734.7:42 ENSMUST00000136053.7:-151 NR_110421:-151 NR_110425:-151 NR_110424:-151 NR_110423:-151 NR_110422:-151 uc033fty.1:-151 uc007ibr.2:-151 uc033ftz.1:-151 uc007ibs.2:-151 uc007ibq.2:-151 AK015657:-151 | |all_trans=ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777.1:0 uc011xru.1:0 BC037766:0 AK013290:0 AK165613:0 AK141825:0 ENSMUST00000139271.1:2 BC054406:41 ENSMUST00000123734.7:42 ENSMUST00000136053.7:-151 NR_110421:-151 NR_110425:-151 NR_110424:-151 NR_110423:-151 NR_110422:-151 uc033fty.1:-151 uc007ibr.2:-151 uc033ftz.1:-151 uc007ibs.2:-151 uc007ibq.2:-151 AK015657:-151 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=175 | |distance_to_tss=175 | ||
|end=16951131 | |end=16951131 | ||
| + | |end_of_center_position=16951108 | ||
|entrez_id=72735 | |entrez_id=72735 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
| − | |gene_alias=2810442I21Rik | + | |gene_alias=2810442I21Rik |
|gene_description=Egfr long non-coding downstream RNA | |gene_description=Egfr long non-coding downstream RNA | ||
|gene_id=72735 | |gene_id=72735 | ||
| Line 24: | Line 27: | ||
|species=mouse | |species=mouse | ||
|start=16951083 | |start=16951083 | ||
| + | |start_of_center_position=16951107 | ||
|strand=- | |strand=- | ||
|tata_box="-91(GGACTTAAAAGA,-,0.00)" | |tata_box="-91(GGACTTAAAAGA,-,0.00)" | ||
Revision as of 21:40, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 16951107 |
|---|---|
| End of the center position in the TSS region: | 16951108 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENSMUST00000130392.7 ENSMUST00000139493.7 ENSMUST00000129735.7 ENSMUST00000142777.1 uc011xru.1 BC037766 AK013290 AK165613 AK141825 |
|---|---|
| Distance: | 0 |
| Num_trans: | 24 |
| All_trans: | ENSMUST00000130392.7:0 ENSMUST00000139493.7:0 ENSMUST00000129735.7:0 ENSMUST00000142777.1:0 uc011xru.1:0 BC037766:0 AK013290:0 AK165613:0 AK141825:0 ENSMUST00000139271.1:2 BC054406:41 ENSMUST00000123734.7:42 ENSMUST00000136053.7:-151 NR_110421:-151 NR_110425:-151 NR_110424:-151 NR_110423:-151 NR_110422:-151 uc033fty.1:-151 uc007ibr.2:-151 uc033ftz.1:-151 uc007ibs.2:-151 uc007ibq.2:-151 AK015657:-151 |
TATA-Box annotation
| Distance to TSS: | 175 |
|---|---|
| Nearest PromoterID: | NR_110421 |
| Entrez ID: | 72735 |
| Nearest Unigene: | Mm.268598 |
| Nearest Refseq: | NR_015469 |
| Nearest Ensembl: | |
| Gene Name: | Egfr long non-coding downstream RNA |
| Gene Alias: | 2810442I21Rik |
| Gene Description: | Egfr long non-coding downstream RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.05 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-91(GGACTTAAAAGA,-,0.00)" |
