Difference between revisions of "TSS:Mm 101199.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |Evi8= | ||
|all_trans=AB221660:172 U33629:-238 U33630:-238 ENSMUST00000102878.10:-286 ENSMUST00000177417.7:-286 AK132298:-321 ENSMUST00000125722.7:-494 ENSMUST00000137300.1:-494 AK049720:-494 AK032947:-494 | |all_trans=AB221660:172 U33629:-238 U33630:-238 ENSMUST00000102878.10:-286 ENSMUST00000177417.7:-286 AK132298:-321 ENSMUST00000125722.7:-494 ENSMUST00000137300.1:-494 AK049720:-494 AK032947:-494 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=553 | |distance_to_tss=553 | ||
|end=19018428 | |end=19018428 | ||
| + | |end_of_center_position=19018416 | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_id=17268 | |gene_id=17268 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=19018403 | |start=19018403 | ||
| + | |start_of_center_position=19018415 | ||
|strand=- | |strand=- | ||
|tata_box="-33(GCTTTTATGCTC,+,0.00)" | |tata_box="-33(GCTTTTATGCTC,+,0.00)" | ||
Revision as of 21:47, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018415 |
|---|---|
| End of the center position in the TSS region: | 19018416 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AB221660 |
|---|---|
| Distance: | 172 |
| Num_trans: | 10 |
| All_trans: | AB221660:172 U33629:-238 U33630:-238 ENSMUST00000102878.10:-286 ENSMUST00000177417.7:-286 AK132298:-321 ENSMUST00000125722.7:-494 ENSMUST00000137300.1:-494 AK049720:-494 AK032947:-494 |
TATA-Box annotation
| Distance to TSS: | 553 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(GCTTTTATGCTC,+,0.00)" |
