Difference between revisions of "TSS:Mm 101203.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000185131.7:0 ENSMUST00000068264.13:0 NM_001193271:0 NM_010789:0 uc007icm.2:0 uc007icl.2:0 uc007icn.2:0 uc007ico.2:0 AK168684:0 AK134321:0 AK14...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Evi8= | ||
|all_trans=ENSMUST00000185131.7:0 ENSMUST00000068264.13:0 NM_001193271:0 NM_010789:0 uc007icm.2:0 uc007icl.2:0 uc007icn.2:0 uc007ico.2:0 AK168684:0 AK134321:0 AK140748:0 BC023689:0 ENSMUST00000144988.7:-12 ENSMUST00000125722.7:35 ENSMUST00000137300.1:35 AK049720:35 AK032947:35 AK132298:208 ENSMUST00000102878.10:243 ENSMUST00000177417.7:243 U33629:291 U33630:291 | |all_trans=ENSMUST00000185131.7:0 ENSMUST00000068264.13:0 NM_001193271:0 NM_010789:0 uc007icm.2:0 uc007icl.2:0 uc007icn.2:0 uc007ico.2:0 AK168684:0 AK134321:0 AK140748:0 BC023689:0 ENSMUST00000144988.7:-12 ENSMUST00000125722.7:35 ENSMUST00000137300.1:35 AK049720:35 AK032947:35 AK132298:208 ENSMUST00000102878.10:243 ENSMUST00000177417.7:243 U33629:291 U33630:291 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 6: | Line 7: | ||
|distance_to_tss=4 | |distance_to_tss=4 | ||
|end=19018973 | |end=19018973 | ||
| + | |end_of_center_position=19018965 | ||
|entrez_id=17268 | |entrez_id=17268 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
| − | |gene_alias=C530044H18Rik | + | |gene_alias=C530044H18Rik |
|gene_description=Meis homeobox 1 | |gene_description=Meis homeobox 1 | ||
|gene_id=17268 | |gene_id=17268 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=19018956 | |start=19018956 | ||
| + | |start_of_center_position=19018964 | ||
|strand=- | |strand=- | ||
|tata_box="86(CCTTTAAGACAA,+,0.00)" | |tata_box="86(CCTTTAAGACAA,+,0.00)" | ||
Revision as of 21:48, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 19018964 |
|---|---|
| End of the center position in the TSS region: | 19018965 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000185131.7 ENSMUST00000068264.13 NM_001193271 NM_010789 uc007icm.2 uc007icl.2 uc007icn.2 uc007ico.2 AK168684 AK134321 AK140748 BC023689 |
|---|---|
| Distance: | 0 |
| Num_trans: | 22 |
| All_trans: | ENSMUST00000185131.7:0 ENSMUST00000068264.13:0 NM_001193271:0 NM_010789:0 uc007icm.2:0 uc007icl.2:0 uc007icn.2:0 uc007ico.2:0 AK168684:0 AK134321:0 AK140748:0 BC023689:0 ENSMUST00000144988.7:-12 ENSMUST00000125722.7:35 ENSMUST00000137300.1:35 AK049720:35 AK032947:35 AK132298:208 ENSMUST00000102878.10:243 ENSMUST00000177417.7:243 U33629:291 U33630:291 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_001193271 |
| Entrez ID: | 17268 |
| Nearest Unigene: | Mm.356578 |
| Nearest Refseq: | NM_010789 |
| Nearest Ensembl: | ENSMUSG00000020160 |
| Gene Name: | Meis homeobox 1 |
| Gene Alias: | C530044H18Rik |
| Gene Description: | Meis homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "86(CCTTTAAGACAA,+,0.00)" |
