Difference between revisions of "TSS:Mm 101221.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.01 |distance= |distance_to_tss=-40825 |end=20153777 |entrez_id=66713 |gc_percent=0.532338 |gene_alias=4921510D23Rik|AA409782|Arp2|D6Ertd7...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AA409782= | ||
| + | |Arp2= | ||
| + | |D6Ertd746e= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| Line 5: | Line 8: | ||
|distance_to_tss=-40825 | |distance_to_tss=-40825 | ||
|end=20153777 | |end=20153777 | ||
| + | |end_of_center_position=20153776 | ||
|entrez_id=66713 | |entrez_id=66713 | ||
|gc_percent=0.532338 | |gc_percent=0.532338 | ||
| − | |gene_alias=4921510D23Rik | + | |gene_alias=4921510D23Rik |
|gene_description=ARP2 actin-related protein 2 | |gene_description=ARP2 actin-related protein 2 | ||
|gene_name=Actr2 | |gene_name=Actr2 | ||
| Line 18: | Line 22: | ||
|species=mouse | |species=mouse | ||
|start=20153774 | |start=20153774 | ||
| + | |start_of_center_position=20153775 | ||
|strand=- | |strand=- | ||
|tata_box="-35(CCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGT,-,0.00),-33(CCTTTAAAAGTG,+,0.00)" | |tata_box="-35(CCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGT,-,0.00),-33(CCTTTAAAAGTG,+,0.00)" | ||
Revision as of 21:51, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 20153775 |
|---|---|
| End of the center position in the TSS region: | 20153776 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -40825 |
|---|---|
| Nearest PromoterID: | NM_146243 |
| Entrez ID: | 66713 |
| Nearest Unigene: | Mm.259045 |
| Nearest Refseq: | NM_146243 |
| Nearest Ensembl: | ENSMUSG00000020152 |
| Gene Name: | Actr2 |
| Gene Alias: | 4921510D23Rik |
| Gene Description: | ARP2 actin-related protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.532338 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(CCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGT,-,0.00),-33(CCTTTAAAAGTG,+,0.00)" |
