Difference between revisions of "TSS:Mm 101285.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000102874.10:1 ENSMUST00000125302.1:-156 NM_001316675:260 NM_008618:260 uc007idv.2:260 AK005237:364 uc029rkv.1:376 AK046369:376 AK077724:378 AK...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=-79 | |distance_to_tss=-79 | ||
|end=21572211 | |end=21572211 | ||
| + | |end_of_center_position=21572203 | ||
|entrez_id=216560 | |entrez_id=216560 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=21572193 | |start=21572193 | ||
| + | |start_of_center_position=21572202 | ||
|strand=- | |strand=- | ||
|tata_box="-35(GTTTTTAAAAGG,-,0.00)" | |tata_box="-35(GTTTTTAAAAGG,-,0.00)" | ||
Revision as of 22:07, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 21572202 |
|---|---|
| End of the center position in the TSS region: | 21572203 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000102874.10 |
|---|---|
| Distance: | 1 |
| Num_trans: | 16 |
| All_trans: | ENSMUST00000102874.10:1 ENSMUST00000125302.1:-156 NM_001316675:260 NM_008618:260 uc007idv.2:260 AK005237:364 uc029rkv.1:376 AK046369:376 AK077724:378 AK164785:380 M29462:381 AK002395:382 AK008270:388 BC050940:394 AK002404:402 AK168545:423 |
TATA-Box annotation
| Distance to TSS: | -79 |
|---|---|
| Nearest PromoterID: | NM_145425 |
| Entrez ID: | 216560 |
| Nearest Unigene: | Mm.138090 |
| Nearest Refseq: | NM_145425 |
| Nearest Ensembl: | ENSMUSG00000020319 |
| Gene Name: | "malate dehydrogenase 1, NAD (soluble)" |
| Gene Alias: | AV249152 |
| Gene Description: | WD repeat containing planar cell polarity effector |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GTTTTTAAAAGG,-,0.00)" |
