Difference between revisions of "TSS:Mm 101288.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AK083671:0 AK083434:-10 AK050758:-10 ENSMUST00000006071.13:-14 AK158588:-14 AK042975:-14 BC057105:24 NM_011023:-50 uc007idy.1:-50 uc007idz.1:-50 ENSMUST...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=58 | |distance_to_tss=58 | ||
|end=22001601 | |end=22001601 | ||
| + | |end_of_center_position=22001593 | ||
|entrez_id=18423 | |entrez_id=18423 | ||
|gc_percent=0.502488 | |gc_percent=0.502488 | ||
| − | |gene_alias=A730044F23Rik | + | |gene_alias=A730044F23Rik |
|gene_description=orthodenticle homeobox 1 | |gene_description=orthodenticle homeobox 1 | ||
|gene_id=18423 | |gene_id=18423 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:97450 | |hgnc_mgi_id=MGI:97450 | ||
| + | |jv= | ||
|nearest_ensembl=ENSMUSG00000005917 | |nearest_ensembl=ENSMUSG00000005917 | ||
|nearest_promoter_id=NM_011023 | |nearest_promoter_id=NM_011023 | ||
| Line 24: | Line 26: | ||
|species=mouse | |species=mouse | ||
|start=22001584 | |start=22001584 | ||
| + | |start_of_center_position=22001592 | ||
|strand=- | |strand=- | ||
|transcript_name=AK083671 | |transcript_name=AK083671 | ||
Revision as of 22:08, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 22001592 |
|---|---|
| End of the center position in the TSS region: | 22001593 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK083671 |
|---|---|
| Distance: | 0 |
| Num_trans: | 13 |
| All_trans: | AK083671:0 AK083434:-10 AK050758:-10 ENSMUST00000006071.13:-14 AK158588:-14 AK042975:-14 BC057105:24 NM_011023:-50 uc007idy.1:-50 uc007idz.1:-50 ENSMUST00000172395.2:-109 AK049430:-109 BC058354:424 |
TATA-Box annotation
| Distance to TSS: | 58 |
|---|---|
| Nearest PromoterID: | NM_011023 |
| Entrez ID: | 18423 |
| Nearest Unigene: | Mm.129663 |
| Nearest Refseq: | NM_011023 |
| Nearest Ensembl: | ENSMUSG00000005917 |
| Gene Name: | orthodenticle homeobox 1 |
| Gene Alias: | A730044F23Rik |
| Gene Description: | orthodenticle homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.502488 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
