Difference between revisions of "TSS:Mm 101312.1"
From referenceTSS
(Created page with "{{TSSDetail |chr=chr11 |cpg_percent=0.005 |distance= |distance_to_tss=80417 |end=22779320 |entrez_id=53625 |gc_percent=0.412935 |gene_alias=AA408337|AA409404|AW260308|B3Galt6|...") |
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| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |AA409404= | ||
| + | |AW260308= | ||
| + | |B3Galt6= | ||
| + | |B3gnt1= | ||
| + | |BGnT-1= | ||
| + | |BGnT-2= | ||
| + | |BGnT1= | ||
| + | |BGnT2= | ||
| + | |Beta3gnt= | ||
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 5: | Line 14: | ||
|distance_to_tss=80417 | |distance_to_tss=80417 | ||
|end=22779320 | |end=22779320 | ||
| + | |end_of_center_position=22779318 | ||
|entrez_id=53625 | |entrez_id=53625 | ||
|gc_percent=0.412935 | |gc_percent=0.412935 | ||
| − | |gene_alias=AA408337 | + | |gene_alias=AA408337 |
|gene_description="UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2" | |gene_description="UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2" | ||
|gene_name=B3gnt2 | |gene_name=B3gnt2 | ||
| Line 18: | Line 28: | ||
|species=mouse | |species=mouse | ||
|start=22779315 | |start=22779315 | ||
| + | |start_of_center_position=22779317 | ||
|strand=- | |strand=- | ||
|tata_box="-27(CACTAGAAAAGC,-,0.00),74(GTCTTTTTAAAC,-,0.00),76(CTTTTTAAACGC,+,0.00)" | |tata_box="-27(CACTAGAAAAGC,-,0.00),74(GTCTTTTTAAAC,-,0.00),76(CTTTTTAAACGC,+,0.00)" | ||
Revision as of 22:11, 11 May 2019
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22779317 |
|---|---|
| End of the center position in the TSS region: | 22779318 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 80417 |
|---|---|
| Nearest PromoterID: | NM_016888 |
| Entrez ID: | 53625 |
| Nearest Unigene: | Mm.395495 |
| Nearest Refseq: | NM_016888 |
| Nearest Ensembl: | ENSMUSG00000051650 |
| Gene Name: | B3gnt2 |
| Gene Alias: | AA408337 |
| Gene Description: | "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2" |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.412935 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-27(CACTAGAAAAGC,-,0.00),74(GTCTTTTTAAAC,-,0.00),76(CTTTTTAAACGC,+,0.00)" |
