Difference between revisions of "TSS:Mm 101411.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENSMUST00000146385.8:80 ENSMUST00000109501.1:-161 AK087049:-161 AK087070:-161 ENSMUST00000093253.9:-191 ENSMUST00000109502.8:-191 AK045568:-191 ENSMUST0...") |
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| Line 6: | Line 6: | ||
|distance_to_tss=234 | |distance_to_tss=234 | ||
|end=28584105 | |end=28584105 | ||
| + | |end_of_center_position=28584090 | ||
|entrez_id=216613 | |entrez_id=216613 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| Line 24: | Line 25: | ||
|species=mouse | |species=mouse | ||
|start=28584074 | |start=28584074 | ||
| + | |start_of_center_position=28584089 | ||
|strand=- | |strand=- | ||
|tata_box="-42(CCTTTTCTGGGC,+,0.00)" | |tata_box="-42(CCTTTTCTGGGC,+,0.00)" | ||
Revision as of 22:32, 11 May 2019
Basic information about the TSS
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| Start of the center position in the TSS region: | 28584089 |
|---|---|
| End of the center position in the TSS region: | 28584090 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENSMUST00000146385.8 |
|---|---|
| Distance: | 80 |
| Num_trans: | 15 |
| All_trans: | ENSMUST00000146385.8:80 ENSMUST00000109501.1:-161 AK087049:-161 AK087070:-161 ENSMUST00000093253.9:-191 ENSMUST00000109502.8:-191 AK045568:-191 ENSMUST00000042534.14:-219 NM_181577:-219 NM_001166661:-219 uc007igk.3:-219 uc007igl.3:-219 uc007igm.2:-219 AK173298:-219 BC066065:329 |
TATA-Box annotation
| Distance to TSS: | 234 |
|---|---|
| Nearest PromoterID: | NM_001166661 |
| Entrez ID: | 216613 |
| Nearest Unigene: | Mm.93759 |
| Nearest Refseq: | NM_181577 |
| Nearest Ensembl: | ENSMUSG00000032878 |
| Gene Name: | coiled-coil domain containing 85A |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 85A |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-42(CCTTTTCTGGGC,+,0.00)" |
