Difference between revisions of "TSS:Mm 101450.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=AF016040:-7 AK157727:-20 AK079842:-20 ENSMUST00000102838.9:-31 NM_009260:-31 uc007iht.1:-31 uc011xss.1:-31 AK169544:-31 AF017112:42 |chr=chr11 |cpg_perc...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |AL033301= | ||
| + | |SPTB2= | ||
| + | |Spnb-2= | ||
| + | |Spnb2= | ||
|all_trans=AF016040:-7 AK157727:-20 AK079842:-20 ENSMUST00000102838.9:-31 NM_009260:-31 uc007iht.1:-31 uc011xss.1:-31 AK169544:-31 AF017112:42 | |all_trans=AF016040:-7 AK157727:-20 AK079842:-20 ENSMUST00000102838.9:-31 NM_009260:-31 uc007iht.1:-31 uc011xss.1:-31 AK169544:-31 AF017112:42 | ||
|chr=chr11 | |chr=chr11 | ||
| Line 5: | Line 9: | ||
|distance=-7 | |distance=-7 | ||
|distance_to_tss=41 | |distance_to_tss=41 | ||
| + | |elf1= | ||
| + | |elf3= | ||
|end=30198226 | |end=30198226 | ||
| + | |end_of_center_position=30198216 | ||
|entrez_id=20742 | |entrez_id=20742 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=9930031C03Rik | + | |gene_alias=9930031C03Rik |
|gene_description="spectrin beta, non-erythrocytic 1" | |gene_description="spectrin beta, non-erythrocytic 1" | ||
|gene_id=20742 | |gene_id=20742 | ||
| Line 17: | Line 24: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=MGI:98388 | |hgnc_mgi_id=MGI:98388 | ||
| + | |mKIAA4049= | ||
|nearest_ensembl=ENSMUSG00000020315 | |nearest_ensembl=ENSMUSG00000020315 | ||
|nearest_promoter_id=NM_009260 | |nearest_promoter_id=NM_009260 | ||
| Line 24: | Line 32: | ||
|species=mouse | |species=mouse | ||
|start=30198205 | |start=30198205 | ||
| + | |start_of_center_position=30198215 | ||
|strand=- | |strand=- | ||
|transcript_name=AF016040 | |transcript_name=AF016040 | ||
Revision as of 22:43, 11 May 2019
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 30198215 |
|---|---|
| End of the center position in the TSS region: | 30198216 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AF016040 |
|---|---|
| Distance: | -7 |
| Num_trans: | 9 |
| All_trans: | AF016040:-7 AK157727:-20 AK079842:-20 ENSMUST00000102838.9:-31 NM_009260:-31 uc007iht.1:-31 uc011xss.1:-31 AK169544:-31 AF017112:42 |
TATA-Box annotation
| Distance to TSS: | 41 |
|---|---|
| Nearest PromoterID: | NM_009260 |
| Entrez ID: | 20742 |
| Nearest Unigene: | Mm.123110 |
| Nearest Refseq: | NM_009260 |
| Nearest Ensembl: | ENSMUSG00000020315 |
| Gene Name: | "spectrin beta, non-erythrocytic 1" |
| Gene Alias: | 9930031C03Rik |
| Gene Description: | "spectrin beta, non-erythrocytic 1" |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
